Magnesium in PDB 2wcl: Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (8E,10Z)-Hexadecadien-1-Ol

The structure of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (8E,10Z)-Hexadecadien-1-Ol, PDB code: 2wcl was solved by G.Robertson, J.-J.Zhou, X.He, J.A.Pickett, L.M.Field, N.H.Keep, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.00 / 1.61
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	33.030, 33.030, 172.101, 90.00, 90.00, 120.00
R / Rfree (%)	17.6 / 23.1

The binding sites of Magnesium atom in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (8E,10Z)-Hexadecadien-1-Ol (pdb code 2wcl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (8E,10Z)-Hexadecadien-1-Ol, PDB code: 2wcl:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (8E,10Z)-Hexadecadien-1-Ol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (8E,10Z)-Hexadecadien-1-Ol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1142 b:27.3 occ:1.00 O A:HOH2008 1.9 30.1 1.0 O A:HOH2031 2.3 36.2 1.0 O A:HOH2033 2.4 25.1 1.0 O A:MET62 4.1 16.7 1.0 OD1 A:ASN57 4.1 19.3 1.0 OG A:SER60 4.6 26.6 1.0 O A:ASN57 4.7 18.6 1.0 CG A:ASN57 4.7 17.0 1.0 CA A:SER60 4.7 18.0 1.0 CB A:SER60 4.8 20.9 1.0 CB A:ASN57 4.9 16.2 1.0 OD1 A:ASP64 5.0 25.0 0.3

Magnesium binding site 2 out of 3 in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (8E,10Z)-Hexadecadien-1-Ol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (8E,10Z)-Hexadecadien-1-Ol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1143 b:31.4 occ:1.00 O A:HOH2024 2.1 32.2 1.0 OD1 A:ASP39 2.2 32.3 1.0 O A:HOH2062 2.4 31.8 1.0 CG A:ASP39 3.4 29.2 1.0 OD2 A:ASP39 3.8 33.4 1.0 OE1 A:GLU130 3.9 27.2 1.0 O A:HOH2023 4.2 22.2 1.0 CB A:ASP39 4.6 24.5 1.0 CD A:GLU130 4.8 24.1 1.0 OE2 A:GLU130 4.9 28.5 1.0

Magnesium binding site 3 out of 3 in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (8E,10Z)-Hexadecadien-1-Ol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (8E,10Z)-Hexadecadien-1-Ol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1144 b:20.5 occ:0.60 O A:GLU22 2.6 21.3 1.0 C A:GLU22 3.6 19.1 1.0 CA A:GLU22 4.4 18.9 1.0 N A:SER23 4.5 16.7 1.0 C A:SER23 4.5 16.6 1.0 CA A:SER23 4.6 16.3 1.0 O A:GLU21 4.6 18.8 1.0 N A:GLY24 4.7 16.8 1.0 O A:SER23 4.9 17.1 1.0

J.-J.Zhou, G.Robertson, X.He, S.Dufour, A.M.Hooper, J.A.Pickett, N.H.Keep, L.M.Field. Characterisation of Bombyx Mori Odorant-Binding Proteins Reveals That A General Odorant-Binding Protein Discriminates Between Sex Pheromone Components. J.Mol.Biol. V. 389 529 2009.
ISSN: ISSN 0022-2836
PubMed: 19371749
DOI: 10.1016/J.JMB.2009.04.015