Magnesium in PDB 2wcm: Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E)-Hexadecen-12-Yn-1-Ol

The structure of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E)-Hexadecen-12-Yn-1-Ol, PDB code: 2wcm was solved by G.Robertson, J.-J.Zhou, X.He, J.A.Pickett, L.M.Field, N.H.Keep, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	62.50 / 1.50
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	33.209, 33.209, 189.363, 90.00, 90.00, 120.00
R / Rfree (%)	19.7 / 24

The binding sites of Magnesium atom in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E)-Hexadecen-12-Yn-1-Ol (pdb code 2wcm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E)-Hexadecen-12-Yn-1-Ol, PDB code: 2wcm:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E)-Hexadecen-12-Yn-1-Ol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E)-Hexadecen-12-Yn-1-Ol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1142 b:15.3 occ:1.00 O A:HOH2058 2.0 20.9 1.0 O A:HOH2056 2.1 18.4 1.0 O A:HOH2057 2.1 15.1 1.0 O A:HOH2091 2.1 20.8 1.0 O A:HOH2094 2.2 16.2 1.0 OD1 A:ASP65 3.3 31.9 1.0 OD1 A:ASP107 4.0 15.2 1.0 O A:HOH2059 4.2 10.5 1.0 OD2 A:ASP107 4.3 16.6 1.0 O A:ASP65 4.5 12.4 1.0 CG A:ASP65 4.5 21.9 1.0 CG A:ASP107 4.5 17.1 1.0 NH1 A:ARG67 4.6 12.1 1.0 O A:THR105 4.7 18.2 1.0

Magnesium binding site 2 out of 2 in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E)-Hexadecen-12-Yn-1-Ol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E)-Hexadecen-12-Yn-1-Ol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1144 b:44.3 occ:1.00 NE2 A:HIS45 4.1 17.0 1.0 CG1 A:ILE29 4.4 23.0 1.0 CE1 A:HIS45 4.8 16.9 1.0 O A:ASP28 4.9 23.4 1.0 CD2 A:HIS45 5.0 16.2 1.0 CB A:ASP28 5.0 22.4 1.0 CA A:ILE29 5.0 19.7 1.0

J.-J.Zhou, G.Robertson, X.He, S.Dufour, A.M.Hooper, J.A.Pickett, N.H.Keep, L.M.Field. Characterisation of Bombyx Mori Odorant-Binding Proteins Reveals That A General Odorant-Binding Protein Discriminates Between Sex Pheromone Components. J.Mol.Biol. V. 389 529 2009.
ISSN: ISSN 0022-2836
PubMed: 19371749
DOI: 10.1016/J.JMB.2009.04.015