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Magnesium in PDB 2wf8: Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate, Glucose-1-Phosphate and Beryllium Trifluoride

Enzymatic activity of Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate, Glucose-1-Phosphate and Beryllium Trifluoride

All present enzymatic activity of Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate, Glucose-1-Phosphate and Beryllium Trifluoride:
5.4.2.6;

Protein crystallography data

The structure of Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate, Glucose-1-Phosphate and Beryllium Trifluoride, PDB code: 2wf8 was solved by M.W.Bowler, N.J.Baxter, C.E.Webster, S.Pollard, T.Alizadeh, A.M.Hounslow, M.J.Cliff, W.Bermel, N.H.Williams, F.Hollfelder, G.M.Blackburn, J.P.Waltho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.300, 54.300, 104.200, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 19.1

Other elements in 2wf8:

The structure of Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate, Glucose-1-Phosphate and Beryllium Trifluoride also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Sodium (Na) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate, Glucose-1-Phosphate and Beryllium Trifluoride (pdb code 2wf8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate, Glucose-1-Phosphate and Beryllium Trifluoride, PDB code: 2wf8:

Magnesium binding site 1 out of 1 in 2wf8

Go back to Magnesium Binding Sites List in 2wf8
Magnesium binding site 1 out of 1 in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate, Glucose-1-Phosphate and Beryllium Trifluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate, Glucose-1-Phosphate and Beryllium Trifluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1222

b:10.1
occ:1.00
 F3 A:BEF1221 2.0 10.6 1.0
OD1 A:ASP170 2.0 10.0 1.0
OD2 A:ASP8 2.1 10.0 1.0
O A:ASP10 2.1 9.6 1.0
O A:HOH2220 2.1 10.5 1.0
O A:HOH2219 2.1 10.9 1.0
CG A:ASP170 3.0 10.5 1.0
CG A:ASP8 3.0 9.0 1.0
BE A:BEF1221 3.2 9.4 1.0
C A:ASP10 3.2 9.3 1.0
OD1 A:ASP8 3.3 9.7 1.0
OD2 A:ASP170 3.3 11.0 1.0
O2 A:BG61224 3.9 11.3 0.5
CA A:ASP10 3.9 9.0 1.0
OE1 A:GLU169 4.0 12.8 1.0
N A:ASP10 4.0 9.1 1.0
O6 A:G1P1223 4.0 5.3 0.2
CB A:ASP10 4.0 9.7 1.0
F2 A:BEF1221 4.2 10.9 1.0
F1 A:BEF1221 4.2 11.0 1.0
N A:GLY11 4.3 9.1 1.0
CB A:ASP170 4.3 9.8 1.0
CB A:ASP8 4.4 8.9 1.0
O A:HOH2250 4.5 11.1 1.0
N A:ASP170 4.6 9.4 1.0
CA A:GLY11 4.6 9.8 1.0
N A:GLY46 4.6 10.7 1.0
CB A:SER171 4.7 11.8 1.0
C A:LEU9 4.7 8.4 1.0
CD A:GLU169 4.7 11.2 1.0
CA A:GLY46 4.8 11.4 1.0
O3 A:G1P1223 4.8 14.6 0.2
OG A:SER171 4.8 12.3 1.0
CA A:ASP170 4.9 9.9 1.0
OE2 A:GLU169 4.9 12.7 1.0
CG2 A:VAL12 4.9 11.3 1.0
N A:SER171 5.0 10.8 1.0

Reference:

J.L.Griffin, M.W.Bowler, N.J.Baxter, K.N.Leigh, H.R.Dannatt, A.M.Hounslow, G.M.Blackburn, C.E.Webster, M.J.Cliff, J.P.Waltho. Near Attack Conformers Dominate Beta-Phosphoglucomutase Complexes Where Geometry and Charge Distribution Reflect Those of Substrate. Proc. Natl. Acad. Sci. V. 109 6910 2012U.S.A..
ISSN: ESSN 1091-6490
PubMed: 22505741
DOI: 10.1073/PNAS.1116855109
Page generated: Wed Aug 14 06:05:51 2024

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