Atomistry » Magnesium » PDB 2wb4-2wkk » 2wf9
Atomistry »
  Magnesium »
    PDB 2wb4-2wkk »
      2wf9 »

Magnesium in PDB 2wf9: Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2

Enzymatic activity of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2

All present enzymatic activity of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2:
5.4.2.6;

Protein crystallography data

The structure of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2, PDB code: 2wf9 was solved by M.W.Bowler, N.J.Baxter, C.E.Webster, S.Pollard, T.Alizadeh, A.M.Hounslow, M.J.Cliff, W.Bermel, N.H.Williams, F.Hollfelder, G.M.Blackburn, J.P.Waltho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 32.100, 72.700, 85.200, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 20

Other elements in 2wf9:

The structure of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2 also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2 (pdb code 2wf9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2, PDB code: 2wf9:

Magnesium binding site 1 out of 1 in 2wf9

Go back to Magnesium Binding Sites List in 2wf9
Magnesium binding site 1 out of 1 in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1222

b:7.7
occ:1.00
 F3 A:BEF1225 2.0 8.6 1.0
O A:HOH2006 2.0 12.6 1.0
OD2 A:ASP8 2.0 7.9 1.0
O A:HOH2195 2.1 10.0 1.0
OD1 A:ASP170 2.1 7.8 1.0
O A:ASP10 2.2 7.3 1.0
CG A:ASP8 3.1 6.5 1.0
CG A:ASP170 3.1 7.0 1.0
BE A:BEF1225 3.2 8.4 1.0
C A:ASP10 3.3 7.1 1.0
OD1 A:ASP8 3.4 6.6 1.0
OD2 A:ASP170 3.5 8.0 1.0
OE2 A:GLU169 3.9 8.7 1.0
CA A:ASP10 4.0 7.3 1.0
CB A:ASP10 4.0 7.7 1.0
N A:ASP10 4.2 6.6 1.0
F2 A:BEF1225 4.2 7.9 1.0
O A:HOH2055 4.3 15.1 1.0
F1 A:BEF1225 4.3 8.8 1.0
N A:GLY11 4.4 7.0 1.0
CB A:ASP8 4.4 5.6 1.0
CB A:ASP170 4.4 6.8 1.0
OD2 A:ASP10 4.5 15.1 1.0
CG A:ASP10 4.6 10.6 1.0
CD A:GLU169 4.6 7.5 1.0
N A:ASP170 4.6 5.9 1.0
OE1 A:GLU169 4.6 8.6 1.0
CA A:GLY11 4.7 6.7 1.0
CA A:GLY46 4.7 23.8 1.0
O2 A:G6P1223 4.8 16.3 0.5
O2 A:BG61224 4.8 16.3 0.5
OG A:SER171 4.9 10.7 1.0
CB A:SER171 4.9 8.5 1.0
C A:LEU9 4.9 6.5 1.0
CA A:ASP170 5.0 6.4 1.0

Reference:

J.L.Griffin, M.W.Bowler, N.J.Baxter, K.N.Leigh, H.R.Dannatt, A.M.Hounslow, G.M.Blackburn, C.E.Webster, M.J.Cliff, J.P.Waltho. Near Attack Conformers Dominate Beta-Phosphoglucomutase Complexes Where Geometry and Charge Distribution Reflect Those of Substrate. Proc.Natl.Acad.Sci.Usa V. 109 6910 2012.
ISSN: ISSN 0027-8424
PubMed: 22505741
DOI: 10.1073/PNAS.1116855109
Page generated: Wed Aug 14 06:05:53 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy