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Magnesium in PDB 2wf9: Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2

Enzymatic activity of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2

All present enzymatic activity of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2:
5.4.2.6;

Protein crystallography data

The structure of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2, PDB code: 2wf9 was solved by M.W.Bowler, N.J.Baxter, C.E.Webster, S.Pollard, T.Alizadeh, A.M.Hounslow, M.J.Cliff, W.Bermel, N.H.Williams, F.Hollfelder, G.M.Blackburn, J.P.Waltho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 32.100, 72.700, 85.200, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 20

Other elements in 2wf9:

The structure of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2 also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2 (pdb code 2wf9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2, PDB code: 2wf9:

Magnesium binding site 1 out of 1 in 2wf9

Go back to Magnesium Binding Sites List in 2wf9
Magnesium binding site 1 out of 1 in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1222

b:7.7
occ:1.00
 F3 A:BEF1225 2.0 8.6 1.0
O A:HOH2006 2.0 12.6 1.0
OD2 A:ASP8 2.0 7.9 1.0
O A:HOH2195 2.1 10.0 1.0
OD1 A:ASP170 2.1 7.8 1.0
O A:ASP10 2.2 7.3 1.0
CG A:ASP8 3.1 6.5 1.0
CG A:ASP170 3.1 7.0 1.0
BE A:BEF1225 3.2 8.4 1.0
C A:ASP10 3.3 7.1 1.0
OD1 A:ASP8 3.4 6.6 1.0
OD2 A:ASP170 3.5 8.0 1.0
OE2 A:GLU169 3.9 8.7 1.0
CA A:ASP10 4.0 7.3 1.0
CB A:ASP10 4.0 7.7 1.0
N A:ASP10 4.2 6.6 1.0
F2 A:BEF1225 4.2 7.9 1.0
O A:HOH2055 4.3 15.1 1.0
F1 A:BEF1225 4.3 8.8 1.0
N A:GLY11 4.4 7.0 1.0
CB A:ASP8 4.4 5.6 1.0
CB A:ASP170 4.4 6.8 1.0
OD2 A:ASP10 4.5 15.1 1.0
CG A:ASP10 4.6 10.6 1.0
CD A:GLU169 4.6 7.5 1.0
N A:ASP170 4.6 5.9 1.0
OE1 A:GLU169 4.6 8.6 1.0
CA A:GLY11 4.7 6.7 1.0
CA A:GLY46 4.7 23.8 1.0
O2 A:G6P1223 4.8 16.3 0.5
O2 A:BG61224 4.8 16.3 0.5
OG A:SER171 4.9 10.7 1.0
CB A:SER171 4.9 8.5 1.0
C A:LEU9 4.9 6.5 1.0
CA A:ASP170 5.0 6.4 1.0

Reference:

J.L.Griffin, M.W.Bowler, N.J.Baxter, K.N.Leigh, H.R.Dannatt, A.M.Hounslow, G.M.Blackburn, C.E.Webster, M.J.Cliff, J.P.Waltho. Near Attack Conformers Dominate Beta-Phosphoglucomutase Complexes Where Geometry and Charge Distribution Reflect Those of Substrate. Proc.Natl.Acad.Sci.Usa V. 109 6910 2012.
ISSN: ISSN 0027-8424
PubMed: 22505741
DOI: 10.1073/PNAS.1116855109
Page generated: Wed Aug 14 06:05:53 2024

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