Atomistry » Magnesium » PDB 2wb4-2wkk » 2wfj
Atomistry »
  Magnesium »
    PDB 2wb4-2wkk »
      2wfj »

Magnesium in PDB 2wfj: Atomic Resolution Crystal Structure of the Ppiase Domain of Human Cyclophilin G in Complex with Cyclosporin A.

Enzymatic activity of Atomic Resolution Crystal Structure of the Ppiase Domain of Human Cyclophilin G in Complex with Cyclosporin A.

All present enzymatic activity of Atomic Resolution Crystal Structure of the Ppiase Domain of Human Cyclophilin G in Complex with Cyclosporin A.:
5.2.1.8;

Protein crystallography data

The structure of Atomic Resolution Crystal Structure of the Ppiase Domain of Human Cyclophilin G in Complex with Cyclosporin A., PDB code: 2wfj was solved by C.M.Stegmann, G.M.Sheldrick, M.C.Wahl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 0.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.319, 64.913, 69.285, 90.00, 90.00, 90.00
R / Rfree (%) 11.1 / 12.9

Other elements in 2wfj:

The structure of Atomic Resolution Crystal Structure of the Ppiase Domain of Human Cyclophilin G in Complex with Cyclosporin A. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Atomic Resolution Crystal Structure of the Ppiase Domain of Human Cyclophilin G in Complex with Cyclosporin A. (pdb code 2wfj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Atomic Resolution Crystal Structure of the Ppiase Domain of Human Cyclophilin G in Complex with Cyclosporin A., PDB code: 2wfj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2wfj

Go back to Magnesium Binding Sites List in 2wfj
Magnesium binding site 1 out of 2 in the Atomic Resolution Crystal Structure of the Ppiase Domain of Human Cyclophilin G in Complex with Cyclosporin A.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atomic Resolution Crystal Structure of the Ppiase Domain of Human Cyclophilin G in Complex with Cyclosporin A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1185

b:6.7
occ:0.78
O A:HOH2078 2.1 9.6 1.0
O A:HOH2074 2.1 8.9 1.0
O A:HOH2071 2.1 9.0 1.0
O A:HOH2024 4.2 12.3 1.0
OE1 A:GLU38 4.3 7.5 1.0
O A:HOH2280 4.3 7.5 0.5
OE2 A:GLU38 4.4 7.9 1.0
NH2 A:ARG41 4.5 7.9 1.0
NE A:ARG41 4.7 7.4 1.0
CD A:GLU38 4.7 6.9 1.0
CZ A:ARG41 4.7 7.6 1.0

Magnesium binding site 2 out of 2 in 2wfj

Go back to Magnesium Binding Sites List in 2wfj
Magnesium binding site 2 out of 2 in the Atomic Resolution Crystal Structure of the Ppiase Domain of Human Cyclophilin G in Complex with Cyclosporin A.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atomic Resolution Crystal Structure of the Ppiase Domain of Human Cyclophilin G in Complex with Cyclosporin A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1186

b:19.4
occ:0.64
O A:HOH2039 1.9 23.1 0.5
O A:HOH2041 2.0 19.9 0.5
O A:HOH2104 2.0 24.2 0.5
O A:HOH2103 2.1 15.5 0.5
O A:HOH2106 3.7 14.9 0.5
O A:SER53 4.4 15.9 1.0
O A:HOH2040 4.8 17.1 0.5
CB A:SER53 4.8 12.5 1.0

Reference:

C.M.Stegmann, D.Seeliger, G.M.Sheldrick, B.L.De Groot, M.C.Wahl. The Thermodynamic Influence of Trapped Water Molecules on A Protein-Ligand Interaction. Angew.Chem.Int.Ed.Engl. V. 48 5207 2009.
ISSN: ISSN 1433-7851
PubMed: 19499554
DOI: 10.1002/ANIE.200900481
Page generated: Mon Dec 14 07:44:12 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy