Atomistry » Magnesium » PDB 2wb4-2wkk » 2wjh
Atomistry »
  Magnesium »
    PDB 2wb4-2wkk »
      2wjh »

Magnesium in PDB 2wjh: Structure and Function of the Feob G-Domain From Methanococcus Jannaschii

Protein crystallography data

The structure of Structure and Function of the Feob G-Domain From Methanococcus Jannaschii, PDB code: 2wjh was solved by S.Koester, M.Wehner, C.Herrmann, W.Kuehlbrandt, O.Yildiz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.944 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 104.200, 50.400, 94.700, 90.00, 120.60, 90.00
R / Rfree (%) 21.04 / 24.61

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii (pdb code 2wjh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii, PDB code: 2wjh:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 2wjh

Go back to Magnesium Binding Sites List in 2wjh
Magnesium binding site 1 out of 3 in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure and Function of the Feob G-Domain From Methanococcus Jannaschii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1167

b:40.6
occ:1.00
O A:HOH2016 2.4 42.8 1.0
O A:HOH2011 2.5 44.7 1.0
O A:GLY25 2.6 49.0 1.0
O A:THR24 2.7 32.5 1.0
OG1 A:THR24 2.7 31.6 1.0
O A:ASN21 2.7 24.7 1.0
C A:THR24 3.2 32.1 1.0
C A:GLY25 3.4 47.8 1.0
MG A:MG1168 3.6 57.3 1.0
CB A:THR24 3.6 30.2 1.0
C A:ASN21 3.7 25.2 1.0
CA A:THR24 3.8 27.4 1.0
N A:GLY25 3.9 35.9 1.0
CA A:ASN21 4.0 24.6 1.0
CG2 A:VAL28 4.1 31.6 1.0
CA A:GLY25 4.2 43.4 1.0
OE2 A:GLU26 4.2 68.1 1.0
N A:THR24 4.2 27.9 1.0
N A:GLU26 4.3 48.0 1.0
CA A:GLU26 4.4 49.8 1.0
O A:PHE20 4.5 16.4 1.0
CB A:ASN21 4.6 26.3 1.0
OE1 A:GLU26 4.6 71.2 1.0
CD A:GLU26 4.7 68.5 1.0
OD1 A:ASN21 4.8 37.5 1.0
N A:ALA22 4.9 25.8 1.0
C A:GLU26 5.0 45.5 1.0
CG2 A:THR24 5.0 28.6 1.0

Magnesium binding site 2 out of 3 in 2wjh

Go back to Magnesium Binding Sites List in 2wjh
Magnesium binding site 2 out of 3 in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure and Function of the Feob G-Domain From Methanococcus Jannaschii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1168

b:57.3
occ:1.00
O A:HOH2014 2.5 52.5 1.0
O A:HOH2016 2.5 42.8 1.0
O A:HOH2002 2.5 40.7 1.0
O A:THR24 2.6 32.5 1.0
O A:ASN21 2.7 24.7 1.0
O A:ALA22 2.8 31.4 1.0
C A:ALA22 3.3 30.5 1.0
CA A:ALA22 3.5 27.4 1.0
MG A:MG1167 3.6 40.6 1.0
O A:HOH2012 3.6 52.0 1.0
C A:ASN21 3.7 25.2 1.0
C A:THR24 3.8 32.1 1.0
N A:ALA22 4.0 25.8 1.0
N A:THR24 4.2 27.9 1.0
O A:HOH2107 4.2 34.0 1.0
N A:LEU23 4.4 29.0 1.0
O A:HOH2009 4.4 43.5 1.0
OE1 A:GLU26 4.5 71.2 1.0
C A:LEU23 4.5 29.7 1.0
CA A:THR24 4.6 27.4 1.0
O A:HOH2015 4.7 52.4 1.0
CB A:ALA22 4.8 28.8 1.0
N A:GLY25 4.8 35.9 1.0
CA A:GLY25 4.9 43.4 1.0
O A:LEU23 5.0 29.1 1.0
CA A:LEU23 5.0 24.3 1.0

Magnesium binding site 3 out of 3 in 2wjh

Go back to Magnesium Binding Sites List in 2wjh
Magnesium binding site 3 out of 3 in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure and Function of the Feob G-Domain From Methanococcus Jannaschii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1167

b:91.0
occ:1.00
O B:THR24 2.7 65.5 1.0
O B:ASN21 2.7 42.9 1.0
OE2 B:GLU26 2.7 0.9 1.0
O B:HOH2008 2.8 58.5 1.0
O B:HOH2007 2.9 69.6 1.0
O B:GLY25 3.2 89.3 1.0
C B:GLY25 3.3 89.5 1.0
N B:GLU26 3.6 96.0 1.0
CD B:GLU26 3.7 0.7 1.0
C B:THR24 3.7 65.0 1.0
O B:HOH2009 3.8 58.8 1.0
C B:ASN21 3.8 42.0 1.0
CA B:GLY25 3.9 82.1 1.0
CA B:GLU26 3.9 0.2 1.0
O B:HOH2010 4.1 54.9 1.0
CG B:GLU26 4.1 0.4 1.0
N B:GLY25 4.2 72.8 1.0
OG1 B:THR24 4.4 39.1 1.0
CA B:ASN21 4.5 41.3 1.0
CB B:GLU26 4.6 0.5 1.0
OE1 B:GLU26 4.7 0.8 1.0
N B:ALA22 4.8 41.5 1.0
CA B:THR24 4.8 57.4 1.0
CB B:ASN21 4.9 42.3 1.0
CA B:ALA22 4.9 38.5 1.0

Reference:

S.Koester, M.Wehner, C.Herrmann, W.Kuehlbrandt, O.Yildiz. Structure and Function of the Feob G-Domain From Methanococcus Jannaschii J.Mol.Biol. V. 392 405 2009.
ISSN: ISSN 0022-2836
PubMed: 19615379
DOI: 10.1016/J.JMB.2009.07.020
Page generated: Wed Aug 14 06:07:17 2024

Last articles

Cl in 2VWU
Cl in 2VWM
Cl in 2VWL
Cl in 2VWD
Cl in 2VVC
Cl in 2VVZ
Cl in 2VVU
Cl in 2VVV
Cl in 2VVE
Cl in 2VUT
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy