Magnesium in PDB 2wjh: Structure and Function of the Feob G-Domain From Methanococcus Jannaschii

The structure of Structure and Function of the Feob G-Domain From Methanococcus Jannaschii, PDB code: 2wjh was solved by S.Koester, M.Wehner, C.Herrmann, W.Kuehlbrandt, O.Yildiz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.944 / 2.10
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	104.200, 50.400, 94.700, 90.00, 120.60, 90.00
R / Rfree (%)	21.04 / 24.61

The binding sites of Magnesium atom in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii (pdb code 2wjh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii, PDB code: 2wjh:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure and Function of the Feob G-Domain From Methanococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1167 b:40.6 occ:1.00 O A:HOH2016 2.4 42.8 1.0 O A:HOH2011 2.5 44.7 1.0 O A:GLY25 2.6 49.0 1.0 O A:THR24 2.7 32.5 1.0 OG1 A:THR24 2.7 31.6 1.0 O A:ASN21 2.7 24.7 1.0 C A:THR24 3.2 32.1 1.0 C A:GLY25 3.4 47.8 1.0 MG A:MG1168 3.6 57.3 1.0 CB A:THR24 3.6 30.2 1.0 C A:ASN21 3.7 25.2 1.0 CA A:THR24 3.8 27.4 1.0 N A:GLY25 3.9 35.9 1.0 CA A:ASN21 4.0 24.6 1.0 CG2 A:VAL28 4.1 31.6 1.0 CA A:GLY25 4.2 43.4 1.0 OE2 A:GLU26 4.2 68.1 1.0 N A:THR24 4.2 27.9 1.0 N A:GLU26 4.3 48.0 1.0 CA A:GLU26 4.4 49.8 1.0 O A:PHE20 4.5 16.4 1.0 CB A:ASN21 4.6 26.3 1.0 OE1 A:GLU26 4.6 71.2 1.0 CD A:GLU26 4.7 68.5 1.0 OD1 A:ASN21 4.8 37.5 1.0 N A:ALA22 4.9 25.8 1.0 C A:GLU26 5.0 45.5 1.0 CG2 A:THR24 5.0 28.6 1.0

Magnesium binding site 2 out of 3 in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure and Function of the Feob G-Domain From Methanococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1168 b:57.3 occ:1.00 O A:HOH2014 2.5 52.5 1.0 O A:HOH2016 2.5 42.8 1.0 O A:HOH2002 2.5 40.7 1.0 O A:THR24 2.6 32.5 1.0 O A:ASN21 2.7 24.7 1.0 O A:ALA22 2.8 31.4 1.0 C A:ALA22 3.3 30.5 1.0 CA A:ALA22 3.5 27.4 1.0 MG A:MG1167 3.6 40.6 1.0 O A:HOH2012 3.6 52.0 1.0 C A:ASN21 3.7 25.2 1.0 C A:THR24 3.8 32.1 1.0 N A:ALA22 4.0 25.8 1.0 N A:THR24 4.2 27.9 1.0 O A:HOH2107 4.2 34.0 1.0 N A:LEU23 4.4 29.0 1.0 O A:HOH2009 4.4 43.5 1.0 OE1 A:GLU26 4.5 71.2 1.0 C A:LEU23 4.5 29.7 1.0 CA A:THR24 4.6 27.4 1.0 O A:HOH2015 4.7 52.4 1.0 CB A:ALA22 4.8 28.8 1.0 N A:GLY25 4.8 35.9 1.0 CA A:GLY25 4.9 43.4 1.0 O A:LEU23 5.0 29.1 1.0 CA A:LEU23 5.0 24.3 1.0

Magnesium binding site 3 out of 3 in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure and Function of the Feob G-Domain From Methanococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1167 b:91.0 occ:1.00 O B:THR24 2.7 65.5 1.0 O B:ASN21 2.7 42.9 1.0 OE2 B:GLU26 2.7 0.9 1.0 O B:HOH2008 2.8 58.5 1.0 O B:HOH2007 2.9 69.6 1.0 O B:GLY25 3.2 89.3 1.0 C B:GLY25 3.3 89.5 1.0 N B:GLU26 3.6 96.0 1.0 CD B:GLU26 3.7 0.7 1.0 C B:THR24 3.7 65.0 1.0 O B:HOH2009 3.8 58.8 1.0 C B:ASN21 3.8 42.0 1.0 CA B:GLY25 3.9 82.1 1.0 CA B:GLU26 3.9 0.2 1.0 O B:HOH2010 4.1 54.9 1.0 CG B:GLU26 4.1 0.4 1.0 N B:GLY25 4.2 72.8 1.0 OG1 B:THR24 4.4 39.1 1.0 CA B:ASN21 4.5 41.3 1.0 CB B:GLU26 4.6 0.5 1.0 OE1 B:GLU26 4.7 0.8 1.0 N B:ALA22 4.8 41.5 1.0 CA B:THR24 4.8 57.4 1.0 CB B:ASN21 4.9 42.3 1.0 CA B:ALA22 4.9 38.5 1.0

S.Koester, M.Wehner, C.Herrmann, W.Kuehlbrandt, O.Yildiz. Structure and Function of the Feob G-Domain From Methanococcus Jannaschii J.Mol.Biol. V. 392 405 2009.
ISSN: ISSN 0022-2836
PubMed: 19615379
DOI: 10.1016/J.JMB.2009.07.020