Magnesium in PDB 2x77: Crystal Structure of Leishmania Major Adp Ribosylation Factor-Like 1.

The structure of Crystal Structure of Leishmania Major Adp Ribosylation Factor-Like 1., PDB code: 2x77 was solved by J.R.Fleming, A.Dawson, W.N.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	78.94 / 2.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	35.286, 78.944, 58.034, 90.00, 93.10, 90.00
R / Rfree (%)	21.4 / 28.7

The binding sites of Magnesium atom in the Crystal Structure of Leishmania Major Adp Ribosylation Factor-Like 1. (pdb code 2x77). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Leishmania Major Adp Ribosylation Factor-Like 1., PDB code: 2x77:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Leishmania Major Adp Ribosylation Factor-Like 1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Leishmania Major Adp Ribosylation Factor-Like 1. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg189 b:26.6 occ:1.00 O A:HOH2013 1.9 24.4 1.0 OG1 A:THR34 2.0 25.3 1.0 O1B A:GDP188 2.1 20.8 1.0 O A:HOH2050 2.2 24.6 1.0 O A:HOH2017 2.3 18.3 1.0 O A:HOH2049 2.3 28.4 1.0 CB A:THR34 3.2 24.8 1.0 PB A:GDP188 3.4 24.6 1.0 OE2 A:GLU57 3.5 41.4 1.0 O3B A:GDP188 3.7 23.2 1.0 O A:HOH2015 3.8 18.7 1.0 N A:THR34 3.9 24.1 1.0 OE1 A:GLU57 3.9 40.9 1.0 OD1 A:ASP70 4.0 24.3 1.0 CD A:GLU57 4.1 40.5 1.0 CA A:THR34 4.1 23.9 1.0 CG2 A:THR34 4.3 23.6 1.0 OD2 A:ASP70 4.3 28.9 1.0 O2B A:GDP188 4.3 23.3 1.0 O1A A:GDP188 4.3 22.6 1.0 O3A A:GDP188 4.5 22.1 1.0 CG A:ASP70 4.6 28.6 1.0 CG1 A:VAL68 4.7 24.1 1.0 PA A:GDP188 4.9 23.3 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Leishmania Major Adp Ribosylation Factor-Like 1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Leishmania Major Adp Ribosylation Factor-Like 1. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg189 b:27.3 occ:1.00 OG1 B:THR34 2.1 27.8 1.0 O B:HOH2010 2.1 39.1 1.0 O1B B:GDP188 2.2 21.5 1.0 O B:HOH2030 2.2 40.1 1.0 O B:HOH2029 2.3 20.2 1.0 O B:HOH2015 2.3 28.1 1.0 OE2 B:GLU57 2.6 46.7 1.0 CB B:THR34 3.3 26.7 1.0 PB B:GDP188 3.5 25.4 1.0 CD B:GLU57 3.7 46.9 1.0 O3B B:GDP188 3.9 27.4 1.0 OE1 B:GLU57 4.1 47.5 1.0 N B:THR34 4.2 24.9 1.0 O1A B:GDP188 4.2 27.0 1.0 CA B:THR34 4.3 25.5 1.0 CG2 B:THR34 4.3 26.0 1.0 O B:HOH2004 4.3 50.6 1.0 OD1 B:ASP70 4.4 33.4 1.0 O2B B:GDP188 4.4 25.0 1.0 O3A B:GDP188 4.6 26.6 1.0 OD2 B:ASP70 4.9 35.6 1.0 PA B:GDP188 4.9 22.7 1.0

J.R.Fleming, A.Dawson, W.N.Hunter. Crystal Structure of Leishmania Major Adp Ribosylation Factor-Like 1 and A Classification of Related Gtpase Family Members in This Kinetoplastid. Mol.Biochem.Parasitol. V. 174 141 2010.
ISSN: ISSN 0166-6851
PubMed: 20801163
DOI: 10.1016/J.MOLBIOPARA.2010.08.002