Atomistry » Magnesium » PDB 2xni-2xzs » 2xok
Atomistry »
  Magnesium »
    PDB 2xni-2xzs »
      2xok »

Magnesium in PDB 2xok: Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution

Enzymatic activity of Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution

All present enzymatic activity of Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution:
3.6.1.34;

Protein crystallography data

The structure of Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution, PDB code: 2xok was solved by D.Stock, A.G.W Leslie, J.E.Walker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.01
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 135.352, 173.711, 137.889, 90.00, 91.77, 90.00
R / Rfree (%) 21 / 25.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution (pdb code 2xok). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution, PDB code: 2xok:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 2xok

Go back to Magnesium Binding Sites List in 2xok
Magnesium binding site 1 out of 5 in the Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg700

b:66.8
occ:1.00
 O2B A:ANP600 2.0 60.6 1.0
O2G A:ANP600 2.0 79.7 1.0
OG1 A:THR178 2.1 70.5 1.0
PG A:ANP600 3.1 80.3 1.0
CB A:THR178 3.3 67.6 1.0
PB A:ANP600 3.3 68.8 1.0
O1G A:ANP600 3.4 88.8 1.0
N3B A:ANP600 3.7 70.2 1.0
O1B A:ANP600 4.1 65.4 1.0
CG2 A:THR178 4.1 68.8 1.0
OD1 A:ASP271 4.2 85.2 1.0
O2A A:ANP600 4.2 68.3 1.0
OD2 A:ASP271 4.3 86.0 1.0
CA A:THR178 4.4 68.2 1.0
N A:THR178 4.4 69.1 1.0
O3A A:ANP600 4.5 72.5 1.0
O3G A:ANP600 4.5 82.7 1.0
O1A A:ANP600 4.6 66.6 1.0
CG A:ASP271 4.6 84.2 1.0
PA A:ANP600 4.7 63.7 1.0

Magnesium binding site 2 out of 5 in 2xok

Go back to Magnesium Binding Sites List in 2xok
Magnesium binding site 2 out of 5 in the Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg700

b:86.4
occ:1.00
 O2G B:ANP600 1.8 0.2 1.0
OG1 B:THR178 1.9 0.5 1.0
O2B B:ANP600 2.6 0.3 1.0
CB B:THR178 3.1 0.9 1.0
PG B:ANP600 3.3 0.7 1.0
O2A B:ANP600 3.4 0.2 1.0
PB B:ANP600 3.9 0.3 1.0
N3B B:ANP600 4.0 0.1 1.0
N B:THR178 4.0 0.2 1.0
CG2 B:THR178 4.1 0.2 1.0
O1G B:ANP600 4.1 0.4 1.0
CA B:THR178 4.1 0.1 1.0
OD2 B:ASP271 4.1 0.6 1.0
PA B:ANP600 4.4 0.8 1.0
O3G B:ANP600 4.4 0.8 1.0
O1A B:ANP600 4.5 0.7 1.0
O3A B:ANP600 4.7 0.3 1.0
OD1 B:ASP271 4.7 0.3 1.0
CG B:ASP271 4.9 0.2 1.0

Magnesium binding site 3 out of 5 in 2xok

Go back to Magnesium Binding Sites List in 2xok
Magnesium binding site 3 out of 5 in the Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg700

b:80.4
occ:1.00
 O2G C:ANP600 1.8 77.4 1.0
OG1 C:THR178 2.0 61.9 1.0
O2B C:ANP600 2.1 63.0 1.0
PG C:ANP600 3.0 74.4 1.0
CB C:THR178 3.1 60.2 1.0
PB C:ANP600 3.4 59.4 1.0
O1G C:ANP600 3.5 80.9 1.0
N3B C:ANP600 3.7 70.2 1.0
O2A C:ANP600 3.8 72.3 1.0
OD2 C:ASP271 4.0 71.4 1.0
CG2 C:THR178 4.0 51.4 1.0
N C:THR178 4.0 59.2 1.0
CA C:THR178 4.1 60.8 1.0
OD1 C:ASP271 4.2 75.6 1.0
O1B C:ANP600 4.3 51.6 1.0
O3G C:ANP600 4.4 83.0 1.0
CG C:ASP271 4.6 72.2 1.0
O3A C:ANP600 4.6 64.6 1.0
PA C:ANP600 4.7 69.9 1.0

Magnesium binding site 4 out of 5 in 2xok

Go back to Magnesium Binding Sites List in 2xok
Magnesium binding site 4 out of 5 in the Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg700

b:71.6
occ:1.00
 O2G D:ANP600 1.8 0.3 1.0
OG1 D:THR164 2.1 70.0 1.0
O2B D:ANP600 2.3 75.0 1.0
CB D:THR164 2.8 71.6 1.0
PG D:ANP600 2.9 0.2 1.0
N3B D:ANP600 3.0 96.2 1.0
OE2 D:GLU193 3.2 88.9 1.0
PB D:ANP600 3.3 70.5 1.0
O2A D:ANP600 3.4 72.8 1.0
OE1 D:GLU189 3.4 92.2 1.0
NH1 D:ARG190 3.6 80.9 1.0
N D:THR164 3.8 71.4 1.0
CG2 D:THR164 3.8 72.2 1.0
CA D:THR164 3.9 69.7 1.0
CD D:GLU193 4.0 85.4 1.0
O1G D:ANP600 4.0 0.5 1.0
O3G D:ANP600 4.1 0.2 1.0
PA D:ANP600 4.1 67.8 1.0
OE1 D:GLU193 4.1 94.2 1.0
O3A D:ANP600 4.2 70.8 1.0
O1A D:ANP600 4.2 69.1 1.0
NH1 C:ARG375 4.4 97.0 1.0
CD D:GLU189 4.4 95.0 1.0
O1B D:ANP600 4.5 71.2 1.0
OD2 D:ASP256 4.7 90.5 1.0
CZ D:ARG190 4.9 73.0 1.0
OD1 D:ASP256 5.0 87.8 1.0

Magnesium binding site 5 out of 5 in 2xok

Go back to Magnesium Binding Sites List in 2xok
Magnesium binding site 5 out of 5 in the Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Refined Structure of Yeast F1C10 Atpase Complex to 3 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg700

b:53.0
occ:1.00
 O2G F:ANP600 1.6 58.5 1.0
OG1 F:THR164 1.8 61.0 1.0
O2B F:ANP600 2.3 39.6 1.0
OE1 F:GLU189 2.8 0.1 1.0
CB F:THR164 2.9 66.1 1.0
PG F:ANP600 3.1 72.1 1.0
PB F:ANP600 3.3 52.0 1.0
N3B F:ANP600 3.4 56.6 1.0
OE2 F:GLU193 3.6 0.2 1.0
CD F:GLU189 3.7 0.9 1.0
N F:THR164 3.9 61.5 1.0
NH1 F:ARG190 3.9 92.4 1.0
CG2 F:THR164 3.9 69.8 1.0
CA F:THR164 4.0 65.8 1.0
O2A F:ANP600 4.0 49.8 1.0
O1G F:ANP600 4.1 75.7 1.0
OE2 F:GLU189 4.2 0.9 1.0
CE F:LYS163 4.2 41.4 1.0
OE1 F:GLU193 4.2 1.0 1.0
O3G F:ANP600 4.2 72.5 1.0
O3A F:ANP600 4.3 61.7 1.0
CD F:GLU193 4.3 98.0 1.0
OD1 F:ASP256 4.4 0.7 1.0
NH1 B:ARG375 4.4 71.8 1.0
PA F:ANP600 4.5 61.9 1.0
O1B F:ANP600 4.6 59.7 1.0
NZ F:LYS163 4.7 49.2 1.0
O1A F:ANP600 4.7 55.5 1.0
CG F:GLU189 4.8 0.6 1.0
OD2 F:ASP256 4.8 94.7 1.0

Reference:

D.Stock, A.G.Leslie, J.E.Walker. Molecular Architecture of the Rotary Motor in Atp Synthase. Science V. 286 1700 1999.
ISSN: ISSN 0036-8075
PubMed: 10576729
DOI: 10.1126/SCIENCE.286.5445.1700
Page generated: Wed Aug 14 07:15:41 2024

Last articles

Cl in 2UYA
Cl in 2UY3
Cl in 2UXX
Cl in 2UU7
Cl in 2UXN
Cl in 2UXG
Cl in 2UXF
Cl in 2UX7
Cl in 2UX1
Cl in 2UWX
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy