Magnesium in PDB 2xto: Crystal Structure of Gdp-Bound Human GIMAP2, Amino Acid Residues 21-260

The structure of Crystal Structure of Gdp-Bound Human GIMAP2, Amino Acid Residues 21-260, PDB code: 2xto was solved by D.Schwefel, C.Froehlich, O.Daumke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	12.00 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	62.680, 76.550, 101.620, 90.00, 90.00, 90.00
R / Rfree (%)	22.941 / 27.565

The binding sites of Magnesium atom in the Crystal Structure of Gdp-Bound Human GIMAP2, Amino Acid Residues 21-260 (pdb code 2xto). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Gdp-Bound Human GIMAP2, Amino Acid Residues 21-260, PDB code: 2xto:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Gdp-Bound Human GIMAP2, Amino Acid Residues 21-260


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Gdp-Bound Human GIMAP2, Amino Acid Residues 21-260 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1257 b:10.7 occ:1.00 O1B A:GDP1256 2.4 19.4 1.0 OG A:SER36 2.4 19.9 1.0 O3B A:GDP1256 3.3 19.1 1.0 PB A:GDP1256 3.4 19.2 1.0 CB A:SER36 3.5 20.2 1.0 NZ A:LYS51 3.8 23.9 1.0 O1A A:GDP1256 3.9 17.1 1.0 OD2 A:ASP80 3.9 21.4 1.0 O A:GLU49 4.3 23.7 1.0 OD2 A:ASP77 4.4 21.4 1.0 O3A A:GDP1256 4.5 18.2 1.0 O2B A:GDP1256 4.5 18.7 1.0 PA A:GDP1256 4.5 17.4 1.0 N A:SER36 4.6 18.8 1.0 CA A:SER36 4.7 19.4 1.0 O2A A:GDP1256 4.7 17.6 1.0 CD A:LYS51 4.7 24.7 1.0 OD1 A:ASP77 4.8 20.5 1.0 CG A:ASP80 4.8 22.7 1.0 CE A:LYS51 4.8 24.4 1.0 OD1 A:ASP80 4.8 22.9 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Gdp-Bound Human GIMAP2, Amino Acid Residues 21-260


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Gdp-Bound Human GIMAP2, Amino Acid Residues 21-260 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1255 b:5.0 occ:1.00 O3B B:GDP1254 2.4 21.0 1.0 OG B:SER36 2.4 20.1 1.0 O3A B:GDP1254 3.2 21.7 1.0 PB B:GDP1254 3.3 21.2 1.0 CB B:SER36 3.4 20.5 1.0 O B:GLU49 3.7 23.9 1.0 O2B B:GDP1254 3.7 21.5 1.0 O1A B:GDP1254 3.9 21.6 1.0 PA B:GDP1254 4.2 20.9 1.0 CD B:LYS51 4.3 24.9 1.0 N B:SER36 4.5 19.1 1.0 NZ B:LYS51 4.5 24.5 1.0 CA B:SER36 4.6 19.7 1.0 CG B:LYS51 4.6 25.0 1.0 OD2 B:ASP77 4.6 21.8 1.0 O1B B:GDP1254 4.6 20.7 1.0 CE B:LYS51 4.8 25.1 1.0 OD2 B:ASP80 4.8 21.6 1.0 C B:GLU49 4.8 24.4 1.0

D.Schwefel, C.Froehlich, J.Eichhorst, B.Wiesner, J.Behlke, L.Aravind, O.Daumke. Structural Basis of Oligomerization in Septin-Like Gtpase of Immunity-Associated Protein 2 (GIMAP2) Proc.Natl.Acad.Sci.Usa V. 107 20299 2010.
ISSN: ISSN 0027-8424
PubMed: 21059949
DOI: 10.1073/PNAS.1010322107