Atomistry » Magnesium » PDB 2xni-2xzs » 2xuu
Atomistry »
  Magnesium »
    PDB 2xni-2xzs »
      2xuu »

Magnesium in PDB 2xuu: Crystal Structure of A Dap-Kinase 1 Mutant

Enzymatic activity of Crystal Structure of A Dap-Kinase 1 Mutant

All present enzymatic activity of Crystal Structure of A Dap-Kinase 1 Mutant:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of A Dap-Kinase 1 Mutant, PDB code: 2xuu was solved by I.De Diego, J.Kuper, F.Lehmann, M.Wilmanns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.36 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.740, 84.430, 86.340, 90.00, 90.00, 90.00
R / Rfree (%) 17.638 / 22.583

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Dap-Kinase 1 Mutant (pdb code 2xuu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Dap-Kinase 1 Mutant, PDB code: 2xuu:

Magnesium binding site 1 out of 1 in 2xuu

Go back to Magnesium Binding Sites List in 2xuu
Magnesium binding site 1 out of 1 in the Crystal Structure of A Dap-Kinase 1 Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Dap-Kinase 1 Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1307

b:14.3
occ:1.00
O1A A:ADP1303 2.0 11.3 1.0
O A:HOH2234 2.1 8.6 1.0
O2B A:ADP1303 2.1 17.5 1.0
OD2 A:ASP161 2.2 10.6 1.0
O A:HOH2402 2.2 15.5 1.0
O A:HOH2223 2.2 16.2 1.0
CG A:ASP161 3.1 11.7 1.0
PB A:ADP1303 3.3 16.5 1.0
PA A:ADP1303 3.3 11.6 1.0
O3A A:ADP1303 3.6 13.0 1.0
OD1 A:ASP161 3.8 12.9 1.0
OE2 A:GLU143 3.8 18.6 1.0
O3' A:ADP1303 4.0 13.7 1.0
OD1 A:ASN144 4.0 7.6 1.0
CB A:ASP161 4.0 8.8 1.0
O3B A:ADP1303 4.1 17.7 1.0
O A:HOH2229 4.2 29.9 1.0
O A:HOH2397 4.2 22.6 1.0
OD2 A:ASP139 4.3 16.4 1.0
ND2 A:ASN144 4.4 9.9 1.0
O5' A:ADP1303 4.4 11.6 1.0
O2A A:ADP1303 4.4 12.1 1.0
C5' A:ADP1303 4.4 12.1 1.0
O A:HOH2226 4.4 17.8 1.0
O1B A:ADP1303 4.5 18.4 1.0
C3' A:ADP1303 4.6 7.4 1.0
O A:HOH2045 4.6 25.9 1.0
CG A:ASN144 4.7 9.8 1.0
O A:HOH2399 4.9 32.0 1.0
CD A:GLU143 5.0 21.7 1.0

Reference:

K.Temmerman, I.De Diego, V.Pogenberg, B.Simon, W.Jonko, X.Li, M.Wilmanns. A Pef/Y Substrate Recognition and Signature Motif Plays A Critical Role in Dapk-Related Kinase Activity. Chem.Biol. V. 21 264 2014.
ISSN: ISSN 1074-5521
PubMed: 24440081
DOI: 10.1016/J.CHEMBIOL.2013.12.008
Page generated: Mon Dec 14 07:47:27 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy