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Magnesium in PDB 2xyv: Crystal Structure of the NSP16 NSP10 Sars Coronavirus Complex

Protein crystallography data

The structure of Crystal Structure of the NSP16 NSP10 Sars Coronavirus Complex, PDB code: 2xyv was solved by E.Decroly, C.Debarnot, F.Ferron, M.Bouvet, B.Coutard, I.Imbert, L.Gluais, N.Papageorgiou, M.Ortiz-Lombardia, J.Lescar, B.Canard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.41 / 2.06
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 68.151, 184.800, 129.015, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 23.4

Other elements in 2xyv:

The structure of Crystal Structure of the NSP16 NSP10 Sars Coronavirus Complex also contains other interesting chemical elements:

Sodium (Na) 3 atoms
Chlorine (Cl) 5 atoms
Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the NSP16 NSP10 Sars Coronavirus Complex (pdb code 2xyv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the NSP16 NSP10 Sars Coronavirus Complex, PDB code: 2xyv:

Magnesium binding site 1 out of 1 in 2xyv

Go back to Magnesium Binding Sites List in 2xyv
Magnesium binding site 1 out of 1 in the Crystal Structure of the NSP16 NSP10 Sars Coronavirus Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the NSP16 NSP10 Sars Coronavirus Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1301

b:41.4
occ:1.00
O A:HOH2085 2.0 28.7 1.0
O A:HOH2181 2.0 40.1 1.0
O A:HOH2254 2.0 37.8 1.0
O A:HOH2255 2.0 46.0 1.0
O A:HOH2253 2.2 38.4 1.0
O A:HOH2238 2.2 46.5 1.0
O A:HOH2084 3.9 30.6 1.0
O A:GLU276 4.0 30.5 1.0
OG1 A:THR58 4.2 25.2 1.0
O A:HOH2182 4.3 51.8 1.0
O A:HOH2031 4.4 48.4 1.0
O A:HOH2131 4.4 58.7 1.0
CL A:CL1299 4.5 40.6 1.0
CG2 A:THR58 4.5 25.1 1.0
O A:HOH2179 4.5 48.7 1.0
OG A:SER188 4.6 25.4 1.0
O A:HOH2241 4.6 40.1 1.0
O A:HOH2130 4.7 42.6 1.0
CA A:LYS277 4.9 30.9 1.0
C A:GLU276 5.0 30.7 1.0
CB A:THR58 5.0 24.8 1.0

Reference:

E.Decroly, C.Debarnot, F.Ferron, M.Bouvet, B.Coutard, I.Imbert, L.Gluais, N.Papageorgiou, A.Sharff, G.Bricogne, M.Ortiz-Lombardia, J.Lescar, B.Canard. Crystal Structure and Functional Analysis of the Sars-Coronavirus Rna Cap 2'-O-Methyltransferase NSP10/NSP16 Complex. Plos Pathog. V. 7 2059 2011.
ISSN: ISSN 1553-7366
PubMed: 21637813
DOI: 10.1371/JOURNAL.PPAT.1002059
Page generated: Mon Dec 14 07:47:38 2020

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