Magnesium in PDB 2y08: Structure of the Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml

The structure of Structure of the Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml, PDB code: 2y08 was solved by J.C.Carlson, S.Li, S.S.Gunatilleke, Y.Anzai, D.A.Burr, L.M.Podust, D.H.Sherman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	134.59 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	64.378, 129.558, 134.585, 90.00, 90.00, 90.00
R / Rfree (%)	14.1 / 20.5

The structure of Structure of the Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Magnesium atom in the Structure of the Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml (pdb code 2y08). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of the Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml, PDB code: 2y08:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of the Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg700 b:31.8 occ:1.00 O A:HOH2209 1.9 17.7 1.0 O A:HOH2121 2.0 21.4 1.0 O A:HOH2050 2.1 34.7 1.0 O A:HOH2382 2.3 22.3 1.0 OD2 A:ASP124 2.3 28.9 1.0 O A:HOH2210 2.6 23.7 1.0 CG A:ASP124 3.2 18.5 1.0 CB A:ASP124 3.5 15.1 1.0 O A:HOH2046 4.0 15.7 1.0 O B:HOH2396 4.0 39.2 1.0 O B:HOH2394 4.1 17.6 1.0 OD1 A:ASP124 4.2 20.8 1.0 OE1 A:GLU21 4.3 16.2 1.0 NE2 A:HIS62 4.4 12.6 1.0 NH2 B:ARG323 4.5 28.6 1.0 O A:GLY331 4.6 29.5 1.0 CG A:MET333 4.6 22.5 1.0 O A:HOH2049 4.7 21.9 1.0 O A:HOH2386 4.7 28.1 1.0 CD A:GLU21 4.7 11.6 1.0 CL A:CL1503 4.7 26.0 1.0 CB B:ARG323 4.8 17.6 1.0 CE1 A:HIS62 4.9 12.7 1.0 CZ B:ARG323 4.9 29.0 1.0

Magnesium binding site 2 out of 2 in the Structure of the Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg700 b:35.8 occ:1.00 O B:HOH2204 2.0 22.8 1.0 O B:HOH2040 2.0 37.9 1.0 O B:HOH2105 2.0 23.3 1.0 O B:HOH2406 2.3 24.2 1.0 OD2 B:ASP124 2.3 29.4 1.0 O B:HOH2205 2.5 24.6 1.0 CG B:ASP124 3.2 18.5 1.0 CB B:ASP124 3.6 14.3 1.0 O B:HOH2044 4.0 16.5 1.0 O A:HOH2376 4.2 23.1 1.0 OD1 B:ASP124 4.2 24.1 1.0 OE1 B:GLU21 4.4 17.6 1.0 NH2 A:ARG323 4.4 32.0 1.0 NE2 B:HIS62 4.4 13.6 1.0 CG B:MET333 4.5 28.9 1.0 O B:GLY331 4.5 34.5 1.0 O B:HOH2202 4.6 12.2 1.0 O B:HOH2409 4.6 32.6 1.0 CB A:ARG323 4.8 18.9 1.0 O B:HOH2039 4.8 24.2 1.0 CD B:GLU21 4.8 16.6 1.0 CZ A:ARG323 4.9 29.6 1.0 CE1 B:HIS62 5.0 16.6 1.0

J.C.Carlson, S.Li, S.S.Gunatilleke, Y.Anzai, D.A.Burr, L.M.Podust, D.H.Sherman. Tirandamycin Biosynthesis Is Mediated By Co-Dependent Oxidative Enzymes Nat.Chem V. 3 628 2011.
ISSN: ISSN 1755-4330
PubMed: 21778983
DOI: 10.1038/NCHEM.1087