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Magnesium in PDB 2yi1: Crystal Structure of N-Acetylmannosamine Kinase in Complex with N-Acetyl Mannosamine 6-Phosphate and Adp.

Enzymatic activity of Crystal Structure of N-Acetylmannosamine Kinase in Complex with N-Acetyl Mannosamine 6-Phosphate and Adp.

All present enzymatic activity of Crystal Structure of N-Acetylmannosamine Kinase in Complex with N-Acetyl Mannosamine 6-Phosphate and Adp.:
2.7.1.60;

Protein crystallography data

The structure of Crystal Structure of N-Acetylmannosamine Kinase in Complex with N-Acetyl Mannosamine 6-Phosphate and Adp., PDB code: 2yi1 was solved by J.Martinez, L.D.Nguyen, E.Tauberger, S.Hinderlich, W.Reutter, H.Fan, W.Saenger, S.Moniot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.40 / 2.15
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 90.700, 90.700, 101.490, 90.00, 90.00, 90.00
R / Rfree (%) 16.667 / 19.101

Other elements in 2yi1:

The structure of Crystal Structure of N-Acetylmannosamine Kinase in Complex with N-Acetyl Mannosamine 6-Phosphate and Adp. also contains other interesting chemical elements:

Calcium (Ca) 3 atoms
Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of N-Acetylmannosamine Kinase in Complex with N-Acetyl Mannosamine 6-Phosphate and Adp. (pdb code 2yi1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of N-Acetylmannosamine Kinase in Complex with N-Acetyl Mannosamine 6-Phosphate and Adp., PDB code: 2yi1:

Magnesium binding site 1 out of 1 in 2yi1

Go back to Magnesium Binding Sites List in 2yi1
Magnesium binding site 1 out of 1 in the Crystal Structure of N-Acetylmannosamine Kinase in Complex with N-Acetyl Mannosamine 6-Phosphate and Adp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of N-Acetylmannosamine Kinase in Complex with N-Acetyl Mannosamine 6-Phosphate and Adp. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1717

b:31.9
occ:1.00
 O A:HOH2142 2.3 33.3 0.8
O1B A:ADP1727 2.4 33.0 0.7
OD2 A:ASP413 2.4 25.0 1.0
O A:HOH2002 2.4 24.5 1.0
O A:HOH2004 2.7 40.6 1.0
CG A:ASP413 3.4 22.8 1.0
O1A A:ADP1727 3.4 46.1 0.7
PB A:ADP1727 3.6 39.0 0.7
OD1 A:ASP413 3.7 22.4 1.0
O18 A:BMX1000 4.0 26.6 0.4
O2B A:ADP1727 4.0 35.7 0.7
O A:HOH2003 4.1 25.5 1.0
PA A:ADP1727 4.2 52.0 0.7
O3A A:ADP1727 4.2 43.0 0.7
O A:HOH2138 4.3 35.6 1.0
CB A:ALA705 4.5 22.0 1.0
NH1 A:ARG420 4.5 46.5 1.0
CA A:GLY415 4.5 28.6 1.0
O2A A:ADP1727 4.6 53.4 0.7
N A:GLY415 4.7 26.8 1.0
CB A:ASP413 4.8 22.5 1.0
O3B A:ADP1727 4.8 40.8 0.7
OD2 A:ASP517 4.9 27.9 1.0

Reference:

J.Martinez, L.D.Nguyen, E.Tauberger, S.Hinderlich, W.Reutter, H.Fan, W.Saenger, S.Moniot. Crystal Structures of N-Acetylmannosamine Kinase Provide Insights Into Enzyme Specificity and Inhibition J.Biol.Chem. V. 287 13656 2012.
ISSN: ISSN 0021-9258
PubMed: 22343627
DOI: 10.1074/JBC.M111.318170
Page generated: Mon Dec 14 07:48:50 2020

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