Magnesium in PDB 2yk0: Structure of the N-Terminal Nts-DBL1-Alpha and Cidr-Gamma Double Domain of the PFEMP1 Protein From Plasmodium Falciparum Varo Strain.

The structure of Structure of the N-Terminal Nts-DBL1-Alpha and Cidr-Gamma Double Domain of the PFEMP1 Protein From Plasmodium Falciparum Varo Strain., PDB code: 2yk0 was solved by A.Lewit-Bentley, A.Juillerat, I.Vigan-Womas, M.Guillotte, A.Hessel, B.Raynal, O.Mercereau-Puijalon, G.A.Bentley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.23 / 2.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	157.907, 144.362, 75.836, 90.00, 102.89, 90.00
R / Rfree (%)	21.3 / 25.5

The binding sites of Magnesium atom in the Structure of the N-Terminal Nts-DBL1-Alpha and Cidr-Gamma Double Domain of the PFEMP1 Protein From Plasmodium Falciparum Varo Strain. (pdb code 2yk0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of the N-Terminal Nts-DBL1-Alpha and Cidr-Gamma Double Domain of the PFEMP1 Protein From Plasmodium Falciparum Varo Strain., PDB code: 2yk0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of the N-Terminal Nts-DBL1-Alpha and Cidr-Gamma Double Domain of the PFEMP1 Protein From Plasmodium Falciparum Varo Strain.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the N-Terminal Nts-DBL1-Alpha and Cidr-Gamma Double Domain of the PFEMP1 Protein From Plasmodium Falciparum Varo Strain. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1717 b:60.5 occ:1.00 O A:SER115 2.5 83.6 1.0 OE2 A:GLU122 2.7 0.8 1.0 OE1 A:GLU122 2.8 0.1 1.0 O A:ASN121 2.9 97.0 1.0 CD A:GLU122 3.1 0.8 1.0 O A:ILE118 3.1 71.5 1.0 C A:SER115 3.5 83.0 1.0 CA A:SER115 4.1 78.9 1.0 C A:ASN121 4.1 97.9 1.0 OG A:SER115 4.2 90.1 1.0 CB A:SER115 4.2 82.7 1.0 C A:ILE118 4.3 72.7 1.0 N A:ASP116 4.4 78.6 1.0 CG A:GLU122 4.5 0.8 1.0 CA A:ASP116 4.7 78.4 1.0 CA A:GLU122 4.8 98.9 1.0 N A:GLU122 4.9 97.6 1.0 O A:ASP116 4.9 79.6 1.0 C A:ASP116 4.9 79.5 1.0 N A:ASN121 5.0 90.4 1.0 N A:GLY120 5.0 81.3 1.0

Magnesium binding site 2 out of 2 in the Structure of the N-Terminal Nts-DBL1-Alpha and Cidr-Gamma Double Domain of the PFEMP1 Protein From Plasmodium Falciparum Varo Strain.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the N-Terminal Nts-DBL1-Alpha and Cidr-Gamma Double Domain of the PFEMP1 Protein From Plasmodium Falciparum Varo Strain. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1718 b:43.1 occ:1.00 O A:SER532 2.6 54.8 1.0 OE2 A:GLU531 3.0 33.6 0.5 OG A:SER532 3.1 64.2 1.0 CD A:GLU531 3.5 40.3 0.5 OE1 A:GLU531 3.5 3.0 0.5 C A:SER532 3.7 54.9 1.0 N A:SER532 4.2 48.5 1.0 CB A:SER532 4.2 55.3 1.0 CA A:SER532 4.3 50.1 1.0 N A:THR533 4.7 54.4 1.0 CG A:GLU531 4.8 46.0 0.5 CA A:THR533 4.9 56.5 1.0

I.Vigan-Womas, M.Guillotte, A.Juillerat, A.Hessel, B.Raynal, P.England, J.H.Cohen, O.Bertrand, T.Peyrard, G.A.Bentley, A.Lewit-Bentley, O.Mercereau-Puijalon. Structural Basis For the Abo Blood-Group Dependence of Plasmodium Falciparum Rosetting. Plos Pathog. V. 8 2781 2012.
ISSN: ISSN 1553-7366
PubMed: 22807674
DOI: 10.1371/JOURNAL.PPAT.100278