Magnesium in PDB 2yvy: Crystal Structure of Magnesium Transporter Mgte Cytosolic Domain, MG2+ Bound Form

The structure of Crystal Structure of Magnesium Transporter Mgte Cytosolic Domain, MG2+ Bound Form, PDB code: 2yvy was solved by M.Hattori, Y.Tanaka, S.Fukai, R.Ishitani, O.Nureki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.31 / 2.30
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	57.727, 57.727, 317.561, 90.00, 90.00, 120.00
R / Rfree (%)	25.6 / 28.6

The binding sites of Magnesium atom in the Crystal Structure of Magnesium Transporter Mgte Cytosolic Domain, MG2+ Bound Form (pdb code 2yvy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Magnesium Transporter Mgte Cytosolic Domain, MG2+ Bound Form, PDB code: 2yvy:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Magnesium Transporter Mgte Cytosolic Domain, MG2+ Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Magnesium Transporter Mgte Cytosolic Domain, MG2+ Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg276 b:43.0 occ:1.00 O A:HOH279 1.8 42.9 1.0 O A:HOH278 1.9 33.6 1.0 OD2 A:ASP247 2.2 36.5 1.0 O A:HOH318 2.2 43.9 1.0 OD2 A:ASP91 2.3 47.1 1.0 CG A:ASP91 3.1 44.8 1.0 CG A:ASP247 3.2 42.7 1.0 OD1 A:ASP91 3.2 47.4 1.0 OD1 A:ASP247 3.6 37.8 1.0 O A:HOH299 3.8 41.1 1.0 OE2 A:GLU166 3.8 46.4 1.0 OG1 A:THR244 3.9 32.3 1.0 OE1 A:GLU166 4.0 49.2 1.0 CD A:GLU166 4.1 48.5 1.0 OD2 A:ASP246 4.1 47.0 1.0 OD1 A:ASP92 4.2 48.1 1.0 O A:HOH290 4.3 38.3 1.0 CB A:ASP91 4.6 43.6 1.0 CB A:ASP247 4.6 38.6 1.0 CG A:ASP92 4.9 45.2 1.0 OD2 A:ASP92 4.9 42.5 1.0 CG A:ASP246 5.0 44.0 1.0 OD1 A:ASP246 5.0 41.3 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Magnesium Transporter Mgte Cytosolic Domain, MG2+ Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Magnesium Transporter Mgte Cytosolic Domain, MG2+ Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg277 b:52.3 occ:1.00 O A:HOH283 1.7 51.5 1.0 OD1 A:ASP95 1.8 50.4 1.0 O A:GLY136 2.1 42.9 1.0 O A:HOH281 2.4 42.7 1.0 O A:HOH280 2.4 40.1 1.0 CG A:ASP95 2.6 47.2 1.0 O A:HOH282 2.6 41.0 1.0 OD2 A:ASP95 2.8 52.3 1.0 C A:GLY136 3.2 44.6 1.0 O A:HOH293 3.8 40.2 1.0 O A:ASP91 3.9 38.5 1.0 OE1 A:GLN98 4.0 48.9 1.0 CB A:ASP95 4.0 46.5 1.0 CA A:GLY136 4.0 45.1 1.0 N A:LEU137 4.2 43.5 1.0 N A:ASP95 4.3 45.5 1.0 CA A:ASP95 4.4 47.5 1.0 CA A:LEU137 4.5 45.9 1.0 O A:HOH290 4.7 38.3 1.0 CB A:ALA94 4.8 39.4 1.0 O A:GLU131 4.8 64.9 1.0 CD A:GLN98 4.9 47.8 1.0 C A:ASP91 4.9 36.3 1.0 CB A:GLU131 4.9 67.6 1.0

M.Hattori, Y.Tanaka, S.Fukai, R.Ishitani, O.Nureki. Crystal Structure of the Mgte Mg(2+) Transporter Nature V. 448 1072 2007.
ISSN: ISSN 0028-0836
PubMed: 17700703
DOI: 10.1038/NATURE06093