Magnesium in PDB 2ywv: Crystal Structure of Saicar Synthetase From Geobacillus Kaustophilus

All present enzymatic activity of Crystal Structure of Saicar Synthetase From Geobacillus Kaustophilus:
6.3.2.6;

The structure of Crystal Structure of Saicar Synthetase From Geobacillus Kaustophilus, PDB code: 2ywv was solved by M.Kanagawa, S.Baba, S.Kuramitsu, S.Yokoyama, G.Kawai, G.Sampei, Rikenstructural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.00 / 1.75
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	49.890, 56.397, 56.410, 76.39, 64.36, 64.35
R / Rfree (%)	18.8 / 19.1

The binding sites of Magnesium atom in the Crystal Structure of Saicar Synthetase From Geobacillus Kaustophilus (pdb code 2ywv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Saicar Synthetase From Geobacillus Kaustophilus, PDB code: 2ywv:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Saicar Synthetase From Geobacillus Kaustophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Saicar Synthetase From Geobacillus Kaustophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:23.5 occ:1.00 O A:HOH709 2.2 13.6 1.0 O2B A:ADP600 2.2 22.6 1.0 O A:HOH798 2.3 18.4 1.0 O A:HOH706 2.3 11.7 1.0 O A:HOH787 2.3 19.7 1.0 O1A A:ADP600 2.4 20.3 1.0 PA A:ADP600 3.2 18.6 1.0 OD2 A:ASP193 3.6 23.3 1.0 PB A:ADP600 3.6 19.7 1.0 O A:HOH897 3.7 46.7 1.0 O A:HOH812 3.8 46.1 1.0 O3A A:ADP600 3.8 18.3 1.0 O A:HOH801 3.9 40.3 1.0 OD1 A:ASP193 4.0 19.2 1.0 NZ A:LYS124 4.0 14.8 1.0 OE2 A:GLU180 4.0 16.5 1.0 CG A:ASP193 4.1 17.0 1.0 NZ A:LYS14 4.2 19.2 1.0 O1B A:ADP600 4.2 25.4 1.0 O5' A:ADP600 4.5 17.7 1.0 O2A A:ADP600 4.5 15.3 1.0 C5' A:ADP600 4.5 16.5 1.0 C3' A:ADP600 4.7 14.5 1.0 NZ A:LYS12 4.8 25.6 1.0 O3B A:ADP600 4.9 19.9 1.0 O A:HOH746 4.9 37.0 1.0 O A:HOH784 4.9 29.2 1.0 CD A:GLU180 5.0 13.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Saicar Synthetase From Geobacillus Kaustophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Saicar Synthetase From Geobacillus Kaustophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg702 b:22.8 occ:1.00 O3B B:ADP601 2.2 22.5 1.0 O B:HOH713 2.2 13.4 1.0 O B:HOH812 2.3 19.3 1.0 O B:HOH709 2.3 17.6 1.0 O B:HOH708 2.3 11.6 1.0 O1A B:ADP601 2.5 20.9 1.0 PA B:ADP601 3.2 19.8 1.0 PB B:ADP601 3.6 20.2 1.0 O3A B:ADP601 3.8 19.0 1.0 NZ B:LYS124 4.0 15.1 1.0 O B:HOH805 4.1 42.6 1.0 OE2 B:GLU180 4.1 16.0 1.0 O2B B:ADP601 4.1 26.7 1.0 OD1 B:ASP193 4.1 13.7 1.0 NZ B:LYS14 4.3 22.2 1.0 OD2 B:ASP193 4.3 15.4 1.0 O2A B:ADP601 4.5 17.9 1.0 O5' B:ADP601 4.5 18.9 1.0 NZ B:LYS12 4.5 21.7 1.0 C5' B:ADP601 4.5 18.0 1.0 CG B:ASP193 4.6 14.2 1.0 O B:HOH811 4.7 31.6 1.0 C3' B:ADP601 4.7 14.7 1.0 O1B B:ADP601 4.7 19.9 1.0 CE B:LYS12 4.9 25.8 1.0 NZ B:LYS178 4.9 35.8 1.0 CD B:GLU180 5.0 14.9 1.0

M.Kanagawa, S.Baba, S.Kuramitsu, S.Yokoyama, G.Kawai, G.Sampei. Crystal Structure of Saicar Synthetase From Geobacillus Kaustophilus To Be Published.