Magnesium in PDB 2z1u: Crystal Structure of Hydrogenase Maturation Protein Hype in Complex with Atp

The structure of Crystal Structure of Hydrogenase Maturation Protein Hype in Complex with Atp, PDB code: 2z1u was solved by Y.Shomura, Y.Higuchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.30 / 2.00
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	67.628, 67.628, 184.218, 90.00, 90.00, 120.00
R / Rfree (%)	20 / 22.8

The binding sites of Magnesium atom in the Crystal Structure of Hydrogenase Maturation Protein Hype in Complex with Atp (pdb code 2z1u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Hydrogenase Maturation Protein Hype in Complex with Atp, PDB code: 2z1u:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Hydrogenase Maturation Protein Hype in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Hydrogenase Maturation Protein Hype in Complex with Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg343 b:29.9 occ:1.00 O A:HOH453 2.0 28.5 1.0 OD1 A:ASP54 2.0 51.1 1.0 O1G A:ATP342 2.1 33.4 1.0 O2A A:ATP342 2.1 31.8 1.0 O1B A:ATP342 2.1 33.3 1.0 CG A:ASP54 3.1 50.6 1.0 PB A:ATP342 3.2 32.6 1.0 PG A:ATP342 3.2 35.5 1.0 PA A:ATP342 3.3 33.6 1.0 O3B A:ATP342 3.5 30.9 1.0 OD2 A:ASP54 3.5 49.5 1.0 O3A A:ATP342 3.6 32.6 1.0 O3G A:ATP342 4.0 34.3 1.0 O A:HOH354 4.0 26.9 1.0 NH1 A:ARG221 4.1 53.7 1.0 O A:THR53 4.2 49.9 1.0 O5' A:ATP342 4.3 32.9 1.0 O1A A:ATP342 4.3 33.9 1.0 CB A:ASP54 4.3 48.0 1.0 O A:HOH370 4.3 37.8 1.0 O2G A:ATP342 4.4 35.5 1.0 O2B A:ATP342 4.6 32.1 1.0 OD1 A:ASP79 4.7 58.8 1.0 CA A:ASP54 4.7 48.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Hydrogenase Maturation Protein Hype in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Hydrogenase Maturation Protein Hype in Complex with Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg344 b:47.3 occ:1.00 OD1 A:ASP218 1.9 61.5 1.0 O2B A:ATP342 2.0 32.1 1.0 OD2 A:ASP79 2.2 51.0 1.0 O A:HOH434 2.5 34.4 1.0 CG A:ASP218 2.7 57.4 1.0 OD2 A:ASP218 2.9 66.7 1.0 CG A:ASP79 3.2 52.5 1.0 O A:HOH370 3.4 37.8 1.0 PB A:ATP342 3.4 32.6 1.0 OD1 A:ASP79 3.4 58.8 1.0 O A:HOH405 3.8 40.2 1.0 O A:ASP218 3.9 53.5 1.0 O3B A:ATP342 4.0 30.9 1.0 CB A:ASP218 4.1 54.4 1.0 O1B A:ATP342 4.2 33.3 1.0 N A:ASP218 4.2 51.5 1.0 O3A A:ATP342 4.5 32.6 1.0 OG1 A:THR220 4.5 52.0 1.0 CB A:ASP79 4.5 50.1 1.0 CA A:ASP218 4.6 53.0 1.0 CG A:ARG217 4.7 49.5 1.0 C A:ASP218 4.7 52.4 1.0 O3G A:ATP342 4.7 34.3 1.0 CA A:ASP79 4.8 50.0 1.0 CG A:MET82 4.8 50.2 1.0

Y.Shomura, H.Komori, N.Miyabe, M.Tomiyama, N.Shibata, Y.Higuchi. Crystal Structures of Hydrogenase Maturation Protein Hype in the Apo and Atp-Bound Forms J.Mol.Biol. V. 372 1045 2007.
ISSN: ISSN 0022-2836
PubMed: 17706667
DOI: 10.1016/J.JMB.2007.07.023