Magnesium in PDB 2z51: Crystal Structure of Arabidopsis Cnfu Involved in Iron-Sulfur Cluster Biosynthesis

The structure of Crystal Structure of Arabidopsis Cnfu Involved in Iron-Sulfur Cluster Biosynthesis, PDB code: 2z51 was solved by T.Yabe, E.Yamashita, M.Nakai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.31 / 1.35
Space group	P 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	43.546, 57.394, 61.303, 90.00, 90.00, 90.00
R / Rfree (%)	13.5 / 17.3

The binding sites of Magnesium atom in the Crystal Structure of Arabidopsis Cnfu Involved in Iron-Sulfur Cluster Biosynthesis (pdb code 2z51). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Arabidopsis Cnfu Involved in Iron-Sulfur Cluster Biosynthesis, PDB code: 2z51:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Arabidopsis Cnfu Involved in Iron-Sulfur Cluster Biosynthesis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Arabidopsis Cnfu Involved in Iron-Sulfur Cluster Biosynthesis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:23.9 occ:1.00 O A:HOH291 1.9 29.8 1.0 OE1 A:GLU143 2.0 21.6 0.5 O A:HOH215 2.2 15.0 1.0 CD A:GLU143 3.1 19.2 0.5 OE2 A:GLU143 3.5 24.0 0.5 O A:HOH272 4.1 22.8 1.0 CG A:GLU143 4.3 17.8 0.5 CB A:GLU143 4.4 15.8 0.5 CB A:GLU143 4.5 16.4 0.5 O A:GLN139 4.6 12.8 1.0 CA A:GLU143 4.6 14.2 1.0 O A:HOH320 4.7 31.4 1.0 N A:GLU143 4.8 13.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Arabidopsis Cnfu Involved in Iron-Sulfur Cluster Biosynthesis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Arabidopsis Cnfu Involved in Iron-Sulfur Cluster Biosynthesis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:31.4 occ:1.00 OE2 A:GLU69 1.8 25.9 1.0 O A:HOH452 1.9 31.2 1.0 O A:HOH417 2.1 37.3 1.0 OD1 A:ASN35 2.1 14.9 1.0 O A:HOH287 2.3 34.2 1.0 O A:HOH315 2.5 34.1 1.0 CD A:GLU69 2.9 20.7 1.0 O A:HOH381 3.0 39.5 1.0 CG A:ASN35 3.2 12.9 1.0 CG A:GLU69 3.6 17.6 1.0 ND2 A:ASN35 3.6 16.8 1.0 OE1 A:GLU69 4.0 26.1 1.0 O A:HOH465 4.1 35.8 1.0 O A:GLY34 4.4 14.6 1.0 O A:HOH366 4.4 33.2 1.0 C A:GLY34 4.4 14.1 1.0 CB A:ASN35 4.5 12.4 1.0 N A:ASN35 4.6 12.6 1.0 CA A:ASN35 4.7 12.0 1.0

T.Yabe, E.Yamashita, A.Kikuchi, K.Morimoto, A.Nakagawa, T.Tsukihara, M.Nakai. Structural Analysis of Arabidopsis Cnfu Protein: An Iron-Sulfur Cluster Biosynthetic Scaffold in Chloroplasts. J.Mol.Biol. 2008.
ISSN: ESSN 1089-8638
PubMed: 18585737
DOI: 10.1016/J.JMB.2008.05.072