Magnesium in PDB 2zhz: Crystal Structure of A Pduo-Type Atp:Cobalamin Adenosyltransferase From Burkholderia Thailandensis

All present enzymatic activity of Crystal Structure of A Pduo-Type Atp:Cobalamin Adenosyltransferase From Burkholderia Thailandensis:
2.5.1.17;

The structure of Crystal Structure of A Pduo-Type Atp:Cobalamin Adenosyltransferase From Burkholderia Thailandensis, PDB code: 2zhz was solved by J.H.Moon, A.K.Park, E.H.Jang, H.S.Kim, Y.M.Chi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.94 / 1.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	53.907, 148.174, 158.096, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 22.9

The binding sites of Magnesium atom in the Crystal Structure of A Pduo-Type Atp:Cobalamin Adenosyltransferase From Burkholderia Thailandensis (pdb code 2zhz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Pduo-Type Atp:Cobalamin Adenosyltransferase From Burkholderia Thailandensis, PDB code: 2zhz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Pduo-Type Atp:Cobalamin Adenosyltransferase From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Pduo-Type Atp:Cobalamin Adenosyltransferase From Burkholderia Thailandensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg203 b:46.8 occ:1.00 O A:HOH284 2.1 62.3 1.0 ND2 A:ASN153 2.2 11.5 1.0 O3G B:ATP201 2.3 41.0 1.0 O1B B:ATP201 2.3 25.8 1.0 O1A B:ATP201 2.3 42.0 1.0 NH2 A:ARG129 2.6 19.0 1.0 PG B:ATP201 3.2 39.7 1.0 PB B:ATP201 3.3 36.5 1.0 PA B:ATP201 3.3 41.6 1.0 CG A:ASN153 3.3 16.0 1.0 NH1 A:ARG129 3.4 32.7 1.0 CZ A:ARG129 3.4 30.8 1.0 O1G B:ATP201 3.5 30.5 1.0 O3B B:ATP201 3.5 38.1 1.0 O3A B:ATP201 3.7 39.8 1.0 OD1 A:ASN153 3.8 20.9 1.0 OD1 A:ASP157 3.8 30.0 1.0 O A:ASN153 3.9 14.4 1.0 O2A B:ATP201 3.9 41.8 1.0 NZ B:LYS28 4.0 19.3 1.0 OD2 A:ASP157 4.0 27.9 1.0 CG A:ASP157 4.3 28.0 1.0 CB A:ASN153 4.5 14.4 1.0 C A:ASN153 4.5 14.0 1.0 CA A:ASN153 4.5 14.4 1.0 O2G B:ATP201 4.5 39.8 1.0 NE A:ARG129 4.7 30.1 1.0 NH1 B:ARG11 4.7 47.6 1.0 O2B B:ATP201 4.7 30.9 1.0 O5' B:ATP201 4.7 43.7 1.0 OE1 A:GLU132 4.9 17.0 1.0 N7 B:ATP201 4.9 30.4 1.0 OE2 A:GLU132 4.9 16.4 1.0 CE B:LYS28 5.0 17.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Pduo-Type Atp:Cobalamin Adenosyltransferase From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Pduo-Type Atp:Cobalamin Adenosyltransferase From Burkholderia Thailandensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg204 b:22.4 occ:1.00 ND2 B:ASN153 2.2 14.2 1.0 O1A B:ATP202 2.2 21.8 1.0 O B:HOH310 2.3 19.2 1.0 O1B B:ATP202 2.3 18.9 1.0 O B:HOH270 2.3 16.6 1.0 O3G B:ATP202 2.3 22.8 1.0 PB B:ATP202 3.3 18.6 1.0 PG B:ATP202 3.4 21.5 1.0 PA B:ATP202 3.4 21.4 1.0 CG B:ASN153 3.4 20.4 1.0 O1G B:ATP202 3.7 26.4 1.0 O3B B:ATP202 3.7 21.3 1.0 O3A B:ATP202 3.7 20.9 1.0 OD1 B:ASN153 3.9 22.4 1.0 O B:ASN153 3.9 15.5 1.0 NZ C:LYS28 4.0 16.5 1.0 NH2 C:ARG11 4.1 18.6 1.0 O2A B:ATP202 4.2 22.9 1.0 NH2 B:ARG129 4.3 23.1 1.0 OG B:SER156 4.4 20.3 1.0 OE1 B:GLU132 4.5 19.2 1.0 CA B:ASN153 4.5 18.8 1.0 CB B:ASN153 4.5 18.3 1.0 C B:ASN153 4.6 17.6 1.0 N7 B:ATP202 4.6 17.3 1.0 O5' B:ATP202 4.6 22.3 1.0 O2G B:ATP202 4.7 24.1 1.0 OE2 B:GLU132 4.7 15.3 1.0 O2B B:ATP202 4.7 19.6 1.0 C8 B:ATP202 4.8 18.4 1.0 CE C:LYS28 4.9 15.3 1.0 NE C:ARG11 4.9 23.1 1.0 CZ C:ARG11 5.0 23.5 1.0 O B:HOH269 5.0 31.2 1.0

J.H.Moon, A.K.Park, E.H.Jang, H.S.Kim, Y.M.Chi. Crystal Structure of A Pduo-Type Atp:Cobalamin Adenosyltransferase From Burkholderia Thailandensis. Proteins V. 72 1066 2008.
ISSN: ISSN 0887-3585
PubMed: 18473361
DOI: 10.1002/PROT.22084