Atomistry » Magnesium » PDB 2zjp-2zvj » 2zl5
Atomistry »
  Magnesium »
    PDB 2zjp-2zvj »
      2zl5 »

Magnesium in PDB 2zl5: Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigen By Norwalk Virus

Protein crystallography data

The structure of Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigen By Norwalk Virus, PDB code: 2zl5 was solved by J.M.Choi, A.M.Huston, M.K.Estes, B.V.V.Prasad, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.10 / 1.47
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 83.517, 83.517, 163.368, 90.00, 90.00, 120.00
R / Rfree (%) 18.1 / 20

Other elements in 2zl5:

The structure of Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigen By Norwalk Virus also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigen By Norwalk Virus (pdb code 2zl5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigen By Norwalk Virus, PDB code: 2zl5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2zl5

Go back to Magnesium Binding Sites List in 2zl5
Magnesium binding site 1 out of 2 in the Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigen By Norwalk Virus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigen By Norwalk Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg522

b:20.7
occ:1.00
OH A:TYR441 2.6 12.9 1.0
O A:LEU236 2.8 11.4 1.0
O A:PRO234 2.9 11.9 1.0
N A:PHE501 3.2 12.3 1.0
CZ A:TYR441 3.5 11.5 1.0
CE1 A:TYR441 3.7 10.9 1.0
CA A:VAL500 3.7 12.4 1.0
CG1 A:VAL500 3.7 13.7 1.0
O A:PHE501 3.9 13.1 1.0
C A:VAL500 3.9 13.3 1.0
C A:LEU236 4.0 10.3 1.0
C A:PRO234 4.0 11.5 1.0
N A:LEU236 4.0 9.9 1.0
CA A:PHE501 4.1 12.5 1.0
CD2 A:LEU238 4.2 14.5 1.0
CB A:VAL500 4.2 12.1 1.0
CB A:PHE501 4.3 12.4 1.0
C A:PHE501 4.5 13.1 1.0
CA A:LEU236 4.6 10.5 1.0
CB A:PRO234 4.7 12.2 1.0
CG2 A:VAL500 4.7 13.2 1.0
CE2 A:TYR441 4.7 11.5 1.0
O A:GLY499 4.7 12.9 1.0
CA A:PRO234 4.8 11.6 1.0
CD2 A:PHE501 4.9 11.7 1.0
CD1 A:LEU241 4.9 10.3 1.0
N A:PRO234 4.9 11.5 1.0
CD1 A:TYR441 5.0 10.9 1.0
N A:ASN235 5.0 11.4 1.0
N A:VAL500 5.0 12.3 1.0

Magnesium binding site 2 out of 2 in 2zl5

Go back to Magnesium Binding Sites List in 2zl5
Magnesium binding site 2 out of 2 in the Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigen By Norwalk Virus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigen By Norwalk Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1

b:21.1
occ:1.00
OH B:TYR441 2.7 13.4 1.0
O B:LEU236 2.8 11.3 1.0
O B:PRO234 2.9 11.8 1.0
N B:PHE501 3.2 12.3 1.0
CZ B:TYR441 3.6 11.8 1.0
CG1 B:VAL500 3.6 13.0 1.0
CE1 B:TYR441 3.7 10.8 1.0
CA B:VAL500 3.7 12.4 1.0
O B:PHE501 3.9 13.2 1.0
C B:VAL500 3.9 13.3 1.0
C B:LEU236 3.9 11.2 1.0
N B:LEU236 4.0 9.7 1.0
C B:PRO234 4.1 11.4 1.0
CA B:PHE501 4.1 12.4 1.0
CB B:VAL500 4.2 11.9 1.0
CB B:PHE501 4.2 12.9 1.0
CD2 B:LEU238 4.4 14.2 1.0
C B:PHE501 4.5 13.5 1.0
CA B:LEU236 4.6 10.8 1.0
CG2 B:VAL500 4.7 12.8 1.0
CB B:PRO234 4.7 11.3 1.0
CE2 B:TYR441 4.8 12.4 1.0
O B:GLY499 4.8 12.3 1.0
CA B:PRO234 4.9 11.4 1.0
CD1 B:LEU241 4.9 9.0 1.0
CD2 B:PHE501 4.9 11.8 1.0
N B:VAL500 5.0 12.1 1.0
N B:PRO234 5.0 11.0 1.0
N B:ASN235 5.0 11.0 1.0
CA B:ASN235 5.0 11.2 1.0

Reference:

J.M.Choi, A.M.Hutson, M.K.Estes, B.V.V.Prasad. Atomic Resolution Structural Characterization of Recognition of Histo-Blood Group Antigens By Norwalk Virus Proc.Natl.Acad.Sci.Usa V. 105 9175 2008.
ISSN: ISSN 0027-8424
PubMed: 18599458
DOI: 10.1073/PNAS.0803275105
Page generated: Wed Aug 14 07:53:33 2024

Last articles

Mg in 8H4B
Mg in 8H6U
Mg in 8H53
Mg in 8H7A
Mg in 8H72
Mg in 8H4P
Mg in 8H6S
Mg in 8H5Y
Mg in 8H4D
Mg in 8H4C
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy