Atomistry » Magnesium » PDB 2zjp-2zvj » 2zox
Atomistry »
  Magnesium »
    PDB 2zjp-2zvj »
      2zox »

Magnesium in PDB 2zox: Crystal Structure of the Covalent Intermediate of Human Cytosolic Beta-Glucosidase

Enzymatic activity of Crystal Structure of the Covalent Intermediate of Human Cytosolic Beta-Glucosidase

All present enzymatic activity of Crystal Structure of the Covalent Intermediate of Human Cytosolic Beta-Glucosidase:
3.2.1.21;

Protein crystallography data

The structure of Crystal Structure of the Covalent Intermediate of Human Cytosolic Beta-Glucosidase, PDB code: 2zox was solved by J.Noguchi, Y.Hayashi, Y.Baba, N.Okino, M.Kimura, M.Ito, Y.Kakuta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.67 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.120, 82.529, 91.673, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 22.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Covalent Intermediate of Human Cytosolic Beta-Glucosidase (pdb code 2zox). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Covalent Intermediate of Human Cytosolic Beta-Glucosidase, PDB code: 2zox:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2zox

Go back to Magnesium Binding Sites List in 2zox
Magnesium binding site 1 out of 2 in the Crystal Structure of the Covalent Intermediate of Human Cytosolic Beta-Glucosidase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Covalent Intermediate of Human Cytosolic Beta-Glucosidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg472

b:11.5
occ:1.00
OG1 A:THR372 3.1 15.4 1.0
O A:HOH487 3.1 18.8 1.0
NH2 A:ARG75 3.2 14.7 1.0
NE A:ARG75 3.2 17.9 1.0
OG A:SER223 3.3 19.5 1.0
CB A:THR372 3.4 16.6 1.0
OE1 A:GLN307 3.4 19.2 1.0
CB A:SER223 3.5 18.1 1.0
CZ A:ARG75 3.6 15.6 1.0
ND2 A:ASN164 3.7 16.3 1.0
CG1 A:ILE161 4.0 14.2 1.0
CG2 A:THR372 4.0 16.2 1.0
OG1 A:THR117 4.0 19.3 1.0
O A:HOH517 4.1 21.2 1.0
CG2 A:ILE161 4.2 15.0 1.0
CD A:ARG75 4.3 15.4 1.0
CG A:ARG75 4.4 16.1 1.0
CB A:ILE161 4.5 16.2 1.0
CD A:GLN307 4.5 20.2 1.0
CD1 A:ILE161 4.6 14.8 1.0
CA A:THR372 4.8 16.9 1.0
O A:THR372 4.8 15.8 1.0
CG A:ASN164 4.9 19.9 1.0
NH1 A:ARG75 4.9 15.8 1.0
CA A:SER223 4.9 18.2 1.0
C A:THR372 5.0 16.7 1.0

Magnesium binding site 2 out of 2 in 2zox

Go back to Magnesium Binding Sites List in 2zox
Magnesium binding site 2 out of 2 in the Crystal Structure of the Covalent Intermediate of Human Cytosolic Beta-Glucosidase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Covalent Intermediate of Human Cytosolic Beta-Glucosidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg473

b:34.2
occ:1.00
O A:ARG285 2.5 25.0 1.0
O A:THR188 2.7 23.5 1.0
O A:HOH604 2.9 27.2 1.0
C A:THR188 3.5 23.5 1.0
CA A:THR188 3.5 24.1 1.0
C A:ARG285 3.5 25.3 1.0
CB A:THR188 3.7 23.7 1.0
CA A:ARG285 3.9 25.2 1.0
CB A:GLN192 4.0 20.3 0.6
N A:GLN192 4.0 21.0 1.0
CB A:ARG285 4.2 24.9 1.0
OE1 A:GLN192 4.2 19.3 0.6
CB A:TYR191 4.3 21.9 1.0
CG2 A:THR188 4.4 23.8 1.0
CA A:GLN192 4.4 20.5 0.6
CD A:PRO287 4.6 26.6 1.0
C A:TYR191 4.7 21.5 1.0
N A:GLY189 4.7 23.2 1.0
N A:LEU286 4.7 25.6 1.0
CG A:PRO287 4.8 26.9 1.0
O A:GLY187 4.9 25.5 1.0
N A:THR188 4.9 24.6 1.0
CG A:ARG285 4.9 25.1 1.0
CG A:GLN192 4.9 19.4 0.6
OG1 A:THR188 4.9 23.6 1.0
CA A:TYR191 5.0 21.8 1.0
CD2 A:TYR191 5.0 22.1 1.0
CD A:GLN192 5.0 19.8 0.6

Reference:

J.Noguchi, Y.Hayashi, Y.Baba, N.Okino, M.Kimura, M.Ito, Y.Kakuta. Crystal Structure of the Covalent Intermediate of Human Cytosolic Beta-Glucosidase Biochem.Biophys.Res.Commun. V. 374 549 2008.
ISSN: ISSN 0006-291X
PubMed: 18662675
DOI: 10.1016/J.BBRC.2008.07.089
Page generated: Wed Aug 14 07:54:48 2024

Last articles

Mg in 8GPS
Mg in 8GRD
Mg in 8GLW
Mg in 8GLX
Mg in 8GMU
Mg in 8GMT
Mg in 8GJ2
Mg in 8GJU
Mg in 8GJ3
Mg in 8GJ0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy