Magnesium in PDB 2zsc: TAMAVIDIN2, Novel Avidin-Like Biotin-Binding Proteins From An Edible Mushroom

The structure of TAMAVIDIN2, Novel Avidin-Like Biotin-Binding Proteins From An Edible Mushroom, PDB code: 2zsc was solved by Y.Kakuta, N.Okino, M.Ito, T.Yamamoto, Y.Takakura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.71 / 1.30
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	78.382, 80.017, 55.733, 90.00, 132.32, 90.00
R / Rfree (%)	19.9 / 23.8

The binding sites of Magnesium atom in the TAMAVIDIN2, Novel Avidin-Like Biotin-Binding Proteins From An Edible Mushroom (pdb code 2zsc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the TAMAVIDIN2, Novel Avidin-Like Biotin-Binding Proteins From An Edible Mushroom, PDB code: 2zsc:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the TAMAVIDIN2, Novel Avidin-Like Biotin-Binding Proteins From An Edible Mushroom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of TAMAVIDIN2, Novel Avidin-Like Biotin-Binding Proteins From An Edible Mushroom within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:15.4 occ:1.00 O A:HOH1969 2.5 39.3 1.0 OH A:TYR45 2.9 9.3 1.0 N A:TYR42 3.0 12.8 1.0 ND2 A:ASN71 3.2 11.6 1.0 O2 A:GOL1813 3.4 29.8 1.0 CA A:VAL41 3.6 12.2 1.0 CD1 A:TYR42 3.7 17.4 1.0 C A:VAL41 3.8 12.3 1.0 CZ A:TYR45 3.8 8.4 1.0 CE1 A:TYR45 3.9 8.4 1.0 CG2 A:VAL43 3.9 11.4 1.0 CA A:TYR42 3.9 13.8 1.0 N A:VAL43 3.9 12.5 1.0 CB A:ASN71 4.0 9.7 1.0 CB A:TYR42 4.0 15.2 1.0 CB A:VAL41 4.1 12.0 1.0 CG A:ASN71 4.1 10.1 1.0 C2 A:GOL1813 4.2 28.8 1.0 CG A:TYR42 4.3 16.8 1.0 C A:TYR42 4.4 13.6 1.0 CG1 A:VAL41 4.4 11.5 1.0 O A:HOH2022 4.4 14.9 1.0 O A:ASP40 4.6 14.6 1.0 O A:HOH1986 4.7 55.0 1.0 CE1 A:TYR42 4.7 18.6 1.0 CB A:VAL43 4.8 12.1 1.0 N A:VAL41 4.8 12.8 1.0 CG1 A:VAL43 4.9 12.9 1.0 CA A:VAL43 4.9 12.3 1.0 O A:VAL41 5.0 12.2 0.7

Magnesium binding site 2 out of 3 in the TAMAVIDIN2, Novel Avidin-Like Biotin-Binding Proteins From An Edible Mushroom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of TAMAVIDIN2, Novel Avidin-Like Biotin-Binding Proteins From An Edible Mushroom within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg201 b:26.0 occ:1.00 O B:HOH3450 2.0 33.5 1.0 O B:HOH3508 2.0 27.0 1.0 O B:HOH3510 2.0 36.0 1.0 O B:HOH3433 2.1 30.3 1.0 O B:HOH3441 2.1 26.9 1.0 O B:HOH3509 2.6 39.0 1.0 O B:HOH3511 4.1 34.2 1.0 O B:HOH3472 4.2 33.8 1.0 O B:HOH3491 4.3 44.9 1.0 O B:HOH3344 4.5 21.8 1.0 O B:HOH3355 4.5 22.2 1.0

Magnesium binding site 3 out of 3 in the TAMAVIDIN2, Novel Avidin-Like Biotin-Binding Proteins From An Edible Mushroom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of TAMAVIDIN2, Novel Avidin-Like Biotin-Binding Proteins From An Edible Mushroom within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:12.1 occ:1.00 OH B:TYR45 3.0 11.8 1.0 N B:TYR42 3.2 13.8 1.0 O B:HOH3503 3.2 14.6 1.0 ND2 B:ASN71 3.3 11.0 1.0 CD2 B:TYR42 3.7 17.9 1.0 CA B:VAL41 3.8 13.4 1.0 CZ B:TYR45 3.9 10.4 1.0 CE1 B:TYR45 3.9 9.9 1.0 C B:VAL41 4.0 13.8 1.0 CB B:ASN71 4.0 10.3 1.0 CG2 B:VAL43 4.0 12.9 1.0 CA B:TYR42 4.1 14.2 1.0 CB B:TYR42 4.1 15.6 1.0 N B:VAL43 4.2 12.5 1.0 CG B:ASN71 4.2 9.4 1.0 CB B:VAL41 4.3 12.9 1.0 CG B:TYR42 4.3 17.2 1.0 CG1 B:VAL41 4.5 12.9 1.0 C B:TYR42 4.6 13.8 1.0 CE2 B:TYR42 4.6 19.4 1.0 O B:ASP40 4.7 15.0 1.0 O B:HOH3342 4.8 18.6 1.0 N B:VAL41 5.0 14.2 1.0

Y.Takakura, M.Tsunashima, J.Suzuki, S.Usami, Y.Kakuta, N.Okino, M.Ito, T.Yamamoto. Tamavidins--Novel Avidin-Like Biotin-Binding Proteins From the Tamogitake Mushroom Febs J. V. 276 1383 2009.
ISSN: ISSN 1742-464X
PubMed: 19187241
DOI: 10.1111/J.1742-4658.2009.06879.X