Magnesium in PDB 2zts: Crystal Structure of Kaic-Like Protein PH0186 From Hyperthermophilic Archaea Pyrococcus Horikoshii OT3

The structure of Crystal Structure of Kaic-Like Protein PH0186 From Hyperthermophilic Archaea Pyrococcus Horikoshii OT3, PDB code: 2zts was solved by H.Ming, K.Miyazono, M.Tanokura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 2.07
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	173.655, 51.807, 97.468, 90.00, 122.83, 90.00
R / Rfree (%)	19.7 / 25

The binding sites of Magnesium atom in the Crystal Structure of Kaic-Like Protein PH0186 From Hyperthermophilic Archaea Pyrococcus Horikoshii OT3 (pdb code 2zts). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Kaic-Like Protein PH0186 From Hyperthermophilic Archaea Pyrococcus Horikoshii OT3, PDB code: 2zts:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Kaic-Like Protein PH0186 From Hyperthermophilic Archaea Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Kaic-Like Protein PH0186 From Hyperthermophilic Archaea Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1904 b:23.2 occ:1.00 OG1 A:THR44 2.0 25.3 1.0 O A:HOH1927 2.0 19.6 1.0 O3B A:ADP1903 2.1 23.3 1.0 O A:HOH1929 2.1 18.4 1.0 O A:HOH1905 2.1 31.8 1.0 O A:HOH1928 2.1 19.5 1.0 CB A:THR44 3.0 24.6 1.0 PB A:ADP1903 3.4 24.2 1.0 O2B A:ADP1903 3.6 24.6 1.0 O2A A:ADP1903 3.7 26.2 1.0 N A:THR44 3.9 25.6 1.0 CA A:THR44 4.0 25.6 1.0 OD1 A:ASP142 4.0 21.9 1.0 CG2 A:THR44 4.0 26.1 1.0 OD2 A:ASP142 4.2 28.8 1.0 O1B A:ADP1903 4.3 25.9 1.0 OE2 A:GLU68 4.4 40.2 1.0 O3A A:ADP1903 4.5 24.2 1.0 PA A:ADP1903 4.6 26.9 1.0 CG A:ASP142 4.6 27.7 1.0 CD A:GLU68 4.7 35.9 1.0 O1A A:ADP1903 4.8 24.0 1.0 CB A:LYS43 5.0 24.6 1.0 C A:LYS43 5.0 25.3 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Kaic-Like Protein PH0186 From Hyperthermophilic Archaea Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Kaic-Like Protein PH0186 From Hyperthermophilic Archaea Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1904 b:21.6 occ:1.00 O3B B:ADP1903 2.0 18.7 1.0 O B:HOH1939 2.0 25.0 1.0 O B:HOH1940 2.0 15.8 1.0 O B:HOH1938 2.1 25.1 1.0 O B:HOH1909 2.2 26.3 1.0 OG1 B:THR44 2.2 25.6 1.0 CB B:THR44 3.2 22.1 1.0 PB B:ADP1903 3.3 21.4 1.0 O2B B:ADP1903 3.5 23.0 1.0 NZ A:LYS222 4.0 22.4 1.0 O2A B:ADP1903 4.0 23.1 1.0 N B:THR44 4.0 22.6 1.0 CG2 B:THR44 4.2 22.8 1.0 OE1 B:GLU68 4.2 45.9 1.0 O B:HOH1921 4.2 25.5 1.0 CA B:THR44 4.2 22.0 1.0 OD1 B:ASP142 4.2 27.7 1.0 OD2 B:ASP142 4.3 28.2 1.0 O1B B:ADP1903 4.3 20.8 1.0 O3A B:ADP1903 4.3 21.7 1.0 CD B:GLU68 4.4 36.6 1.0 PA B:ADP1903 4.5 24.0 1.0 CG B:ASP142 4.7 25.3 1.0 O1A B:ADP1903 4.8 25.8 1.0 CG B:GLU68 4.8 37.1 1.0 OE2 B:GLU68 4.8 31.8 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Kaic-Like Protein PH0186 From Hyperthermophilic Archaea Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Kaic-Like Protein PH0186 From Hyperthermophilic Archaea Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1904 b:21.3 occ:1.00 O C:HOH1929 2.0 22.7 1.0 O3B C:ADP1903 2.1 24.6 1.0 O C:HOH1930 2.1 16.9 1.0 O C:HOH1928 2.1 17.9 1.0 O C:HOH1931 2.1 24.2 1.0 OG1 C:THR44 2.2 23.1 1.0 CB C:THR44 3.2 23.5 1.0 PB C:ADP1903 3.4 22.9 1.0 O2B C:ADP1903 3.6 24.9 1.0 N C:THR44 4.0 24.1 1.0 O C:HOH1918 4.0 22.9 1.0 O2A C:ADP1903 4.0 18.5 1.0 OD1 C:ASP142 4.1 24.4 1.0 OE1 C:GLU68 4.1 35.2 1.0 CA C:THR44 4.2 23.3 1.0 NZ B:LYS222 4.2 24.4 1.0 CG2 C:THR44 4.2 23.8 1.0 OD2 C:ASP142 4.2 26.7 1.0 O3A C:ADP1903 4.4 22.1 1.0 O1B C:ADP1903 4.4 17.6 1.0 CD C:GLU68 4.6 33.6 1.0 CG C:ASP142 4.6 27.0 1.0 PA C:ADP1903 4.6 22.8 1.0 CB C:LYS43 4.9 22.1 1.0 O1A C:ADP1903 4.9 22.8 1.0 CG C:GLU68 5.0 33.6 1.0

H.-J.Kang, K.Kubota, H.Ming, K.Miyazono, M.Tanokura. Crystal Structure of Kaic-Like Protein PH0186 From Hyperthermophilic Archaea Pyrococcus Horikoshii OT3 Proteins V. 75 1035 2009.
ISSN: ISSN 0887-3585
PubMed: 19274727
DOI: 10.1002/PROT.22367