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Magnesium in PDB 3a99: Structure of Pim-1 Kinase Crystallized in the Presence of P27KIP1 Carboxy-Terminal Peptide

Enzymatic activity of Structure of Pim-1 Kinase Crystallized in the Presence of P27KIP1 Carboxy-Terminal Peptide

All present enzymatic activity of Structure of Pim-1 Kinase Crystallized in the Presence of P27KIP1 Carboxy-Terminal Peptide:
2.7.11.1;

Protein crystallography data

The structure of Structure of Pim-1 Kinase Crystallized in the Presence of P27KIP1 Carboxy-Terminal Peptide, PDB code: 3a99 was solved by D.Morishita, M.Takami, S.Yoshikawa, R.Katayama, S.Sato, M.Kukimoto-Niino, T.Umehara, M.Shirouzu, K.Sekimizu, S.Yokoyama, N.Fujita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.13 / 1.60
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 98.156, 98.156, 80.296, 90.00, 90.00, 120.00
R / Rfree (%) 18.7 / 20.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Pim-1 Kinase Crystallized in the Presence of P27KIP1 Carboxy-Terminal Peptide (pdb code 3a99). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Pim-1 Kinase Crystallized in the Presence of P27KIP1 Carboxy-Terminal Peptide, PDB code: 3a99:

Magnesium binding site 1 out of 1 in 3a99

Go back to Magnesium Binding Sites List in 3a99
Magnesium binding site 1 out of 1 in the Structure of Pim-1 Kinase Crystallized in the Presence of P27KIP1 Carboxy-Terminal Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Pim-1 Kinase Crystallized in the Presence of P27KIP1 Carboxy-Terminal Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:18.8
occ:1.00
 O2B A:ANP501 2.1 20.3 1.0
OD2 A:ASP186 2.1 17.0 1.0
O2A A:ANP501 2.1 21.1 1.0
O1G A:ANP501 2.2 25.3 1.0
O A:HOH577 2.2 17.8 1.0
O A:HOH596 2.3 24.8 1.0
CG A:ASP186 3.2 16.2 1.0
PB A:ANP501 3.2 20.8 1.0
PG A:ANP501 3.4 25.2 1.0
O A:HOH352 3.4 23.9 1.0
PA A:ANP501 3.5 18.8 1.0
O3A A:ANP501 3.9 17.4 1.0
N3B A:ANP501 3.9 20.9 1.0
O A:HOH356 4.0 19.8 1.0
CB A:ASP186 4.0 16.8 1.0
O2G A:ANP501 4.0 24.1 1.0
OD1 A:ASP186 4.1 19.4 1.0
OD1 A:ASN172 4.1 16.0 1.0
O1A A:ANP501 4.2 18.4 1.0
O A:HOH499 4.2 36.3 1.0
O A:HOH475 4.2 41.5 1.0
O A:HOH572 4.2 44.3 1.0
O A:HOH411 4.2 30.3 1.0
O A:HOH476 4.4 36.5 1.0
O1B A:ANP501 4.5 20.8 1.0
O3G A:ANP501 4.6 24.1 1.0
O5' A:ANP501 4.6 18.8 1.0
O A:HOH405 4.7 26.3 1.0
C5' A:ANP501 4.7 22.6 1.0
O A:HOH543 4.9 33.3 1.0

Reference:

D.Morishita, M.Takami, S.Yoshikawa, R.Katayama, S.Sato, M.Kukimoto-Niino, T.Umehara, M.Shirouzu, K.Sekimizu, S.Yokoyama, N.Fujita. Cell-Permeable Carboxyl-Terminal P27(KIP1) Peptide Exhibits Anti-Tumor Activity By Inhibiting Pim-1 Kinase J.Biol.Chem. V. 286 2681 2011.
ISSN: ISSN 0021-9258
PubMed: 21062737
DOI: 10.1074/JBC.M109.092452
Page generated: Sun Aug 10 17:23:49 2025

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