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Magnesium in PDB 3av0: Crystal Structure of MRE11-RAD50 Bound to Atp S

Protein crystallography data

The structure of Crystal Structure of MRE11-RAD50 Bound to Atp S, PDB code: 3av0 was solved by H.S.Lim, J.S.Kim, Y.Cho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.32 / 3.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 86.958, 147.129, 175.907, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 27.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of MRE11-RAD50 Bound to Atp S (pdb code 3av0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of MRE11-RAD50 Bound to Atp S, PDB code: 3av0:

Magnesium binding site 1 out of 1 in 3av0

Go back to Magnesium Binding Sites List in 3av0
Magnesium binding site 1 out of 1 in the Crystal Structure of MRE11-RAD50 Bound to Atp S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of MRE11-RAD50 Bound to Atp S within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1007

b:70.8
occ:1.00
O3G B:AGS1006 2.2 74.6 1.0
O B:HOH1401 2.3 62.2 1.0
OG B:SER39 2.3 66.3 1.0
O2B B:AGS1006 2.4 50.9 1.0
OE1 B:GLN134 2.4 65.8 1.0
O B:HOH1400 2.5 57.7 1.0
PG B:AGS1006 3.4 75.4 1.0
PB B:AGS1006 3.5 66.7 1.0
CD B:GLN134 3.5 66.9 1.0
CB B:SER39 3.6 68.2 1.0
OD1 B:ASP946 3.8 68.2 1.0
O3B B:AGS1006 3.9 65.1 1.0
NE2 B:GLN134 4.0 68.8 1.0
N B:SER39 4.1 68.7 1.0
O3A B:AGS1006 4.2 69.2 1.0
S1G B:AGS1006 4.2 88.2 1.0
CA B:SER39 4.4 68.5 1.0
OD2 B:ASP946 4.4 79.2 1.0
CG B:ASP946 4.5 69.7 1.0
CB B:LYS38 4.7 68.2 1.0
OE2 B:GLU947 4.7 85.3 1.0
O2G B:AGS1006 4.8 71.6 1.0
CG B:GLN134 4.8 64.2 1.0
O1A B:AGS1006 4.8 50.8 1.0
O2A B:AGS1006 4.8 71.0 1.0
PA B:AGS1006 4.8 60.9 1.0
CB B:GLN134 4.8 61.0 1.0
O1B B:AGS1006 4.8 64.6 1.0
CE B:LYS38 4.9 61.7 1.0

Reference:

H.S.Lim, J.S.Kim, Y.B.Park, G.H.Gwon, Y.Cho. Crystal Structure of the MRE11-RAD50-Atp S Complex: Understanding the Interplay Between MRE11 and RAD50 To Be Published.
Page generated: Wed Aug 14 08:46:50 2024

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