Magnesium in PDB 3b6u: Crystal Structure of the Motor Domain of Human Kinesin Family Member 3B in Complex with Adp

The structure of Crystal Structure of the Motor Domain of Human Kinesin Family Member 3B in Complex with Adp, PDB code: 3b6u was solved by H.Zhu, Y.Shen, W.Tempel, R.Landry, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.86 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	58.731, 95.852, 63.883, 90.00, 92.61, 90.00
R / Rfree (%)	19.1 / 23.3

The binding sites of Magnesium atom in the Crystal Structure of the Motor Domain of Human Kinesin Family Member 3B in Complex with Adp (pdb code 3b6u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Motor Domain of Human Kinesin Family Member 3B in Complex with Adp, PDB code: 3b6u:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Motor Domain of Human Kinesin Family Member 3B in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Motor Domain of Human Kinesin Family Member 3B in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:20.6 occ:1.00 O A:HOH576 2.1 18.4 1.0 OG1 A:THR103 2.1 14.1 1.0 O1B A:ADP402 2.1 17.2 1.0 O A:HOH713 2.1 14.3 1.0 O A:HOH521 2.1 17.8 1.0 O A:HOH681 2.2 17.8 1.0 CB A:THR103 3.1 14.5 1.0 PB A:ADP402 3.3 16.2 1.0 O2B A:ADP402 3.5 16.0 1.0 O A:HOH541 3.8 18.7 1.0 N A:THR103 4.0 16.6 1.0 CA A:THR103 4.1 16.5 1.0 OD2 A:ASP245 4.1 17.6 1.0 O A:HOH629 4.2 22.1 1.0 O1A A:ADP402 4.2 18.4 1.0 O A:HOH518 4.2 17.8 1.0 CG2 A:THR103 4.2 18.7 1.0 O A:HOH705 4.2 23.2 1.0 O A:HOH660 4.3 24.8 1.0 O3A A:ADP402 4.3 18.8 1.0 OD1 A:ASP245 4.4 16.9 1.0 O3B A:ADP402 4.4 16.0 1.0 PA A:ADP402 4.6 18.7 1.0 CG A:ASP245 4.7 18.3 1.0 O A:HOH618 4.7 16.2 1.0 OG A:SER212 4.8 30.2 1.0 O2A A:ADP402 4.8 19.2 1.0 O A:HOH842 4.8 24.8 1.0 CB A:LYS102 4.9 16.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Motor Domain of Human Kinesin Family Member 3B in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Motor Domain of Human Kinesin Family Member 3B in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:17.1 occ:1.00 O B:HOH665 2.0 14.3 1.0 O2B B:ADP402 2.0 14.3 1.0 O B:HOH699 2.1 14.4 1.0 O B:HOH822 2.1 17.6 1.0 OG1 B:THR103 2.1 14.6 1.0 O B:HOH698 2.1 14.2 1.0 CB B:THR103 3.2 12.3 1.0 PB B:ADP402 3.2 14.0 1.0 O3B B:ADP402 3.5 15.2 1.0 O B:HOH501 4.0 15.1 1.0 N B:THR103 4.0 12.5 1.0 OD2 B:ASP245 4.1 17.0 1.0 O1A B:ADP402 4.1 14.2 1.0 O B:HOH529 4.2 14.5 1.0 CA B:THR103 4.2 15.2 1.0 O B:HOH706 4.2 20.8 1.0 CG2 B:THR103 4.2 12.7 1.0 O B:HOH624 4.3 22.6 1.0 O B:HOH794 4.3 29.1 1.0 O3A B:ADP402 4.3 15.6 1.0 OD1 B:ASP245 4.3 15.9 1.0 O1B B:ADP402 4.4 15.0 1.0 OG B:SER212 4.6 23.0 1.0 PA B:ADP402 4.6 16.5 1.0 CG B:ASP245 4.6 17.0 1.0 O B:HOH523 4.7 12.7 1.0 O2A B:ADP402 4.8 15.2 1.0 O B:HOH648 4.8 18.1 1.0 CE B:LYS102 5.0 15.8 1.0

H.Zhu, Y.Shen, W.Tempel, R.Landry, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park. Motor Domain of Human Kinesin Family Member 3B in Complex with Adp. To Be Published.