Magnesium in PDB 3bc1: Crystal Structure of the Complex RAB27A-SLP2A

All present enzymatic activity of Crystal Structure of the Complex RAB27A-SLP2A:
3.6.5.2;

The structure of Crystal Structure of the Complex RAB27A-SLP2A, PDB code: 3bc1 was solved by L.M.G.Chavas, K.Ihara, M.Kawasaki, S.Wakatsuki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	53.505, 77.777, 115.011, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 24.5

The binding sites of Magnesium atom in the Crystal Structure of the Complex RAB27A-SLP2A (pdb code 3bc1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Complex RAB27A-SLP2A, PDB code: 3bc1:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Complex RAB27A-SLP2A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Complex RAB27A-SLP2A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg194 b:15.3 occ:1.00 O3G A:GNP195 2.0 12.6 1.0 OG1 A:THR41 2.0 15.1 1.0 OG1 A:THR23 2.1 13.7 1.0 O2B A:GNP195 2.1 13.4 1.0 O A:HOH200 2.1 13.3 1.0 O A:HOH205 2.2 14.5 1.0 CB A:THR41 3.1 15.7 1.0 PG A:GNP195 3.2 14.3 1.0 CB A:THR23 3.2 12.7 1.0 PB A:GNP195 3.2 14.5 1.0 N3B A:GNP195 3.4 13.2 1.0 N A:THR41 3.7 15.9 1.0 O1G A:GNP195 3.8 13.6 1.0 CA A:THR41 4.0 16.0 1.0 N A:THR23 4.0 12.5 1.0 O2A A:GNP195 4.1 13.3 1.0 O A:HOH219 4.1 19.3 1.0 OD2 A:ASP74 4.1 17.0 1.0 OD1 A:ASP74 4.1 16.7 1.0 CA A:THR23 4.1 12.6 1.0 CG2 A:THR41 4.3 15.5 1.0 O3A A:GNP195 4.3 12.9 1.0 CG2 A:THR23 4.3 12.4 1.0 O1B A:GNP195 4.3 12.6 1.0 O2G A:GNP195 4.5 14.6 1.0 PA A:GNP195 4.5 13.7 1.0 CG A:ASP74 4.5 16.6 1.0 O A:ILE39 4.6 16.3 1.0 O1A A:GNP195 4.7 12.2 1.0 C A:THR40 4.7 16.4 1.0 O A:THR75 4.7 16.6 1.0 CA A:THR40 4.9 16.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Complex RAB27A-SLP2A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Complex RAB27A-SLP2A within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg194 b:10.4 occ:1.00 OG1 E:THR41 2.0 13.5 1.0 O2B E:GNP195 2.0 11.3 1.0 O E:HOH311 2.1 11.6 1.0 O3G E:GNP195 2.1 9.0 1.0 OG1 E:THR23 2.1 9.8 1.0 O E:HOH305 2.2 11.7 1.0 CB E:THR41 3.1 15.1 1.0 PG E:GNP195 3.2 10.1 1.0 PB E:GNP195 3.2 12.4 1.0 CB E:THR23 3.3 10.9 1.0 N3B E:GNP195 3.4 10.2 1.0 N E:THR41 3.7 15.1 1.0 O1G E:GNP195 3.8 11.1 1.0 CA E:THR41 4.0 15.3 1.0 N E:THR23 4.0 11.3 1.0 OD1 E:ASP74 4.1 15.9 1.0 OD2 E:ASP74 4.1 15.0 1.0 O2A E:GNP195 4.1 11.0 1.0 CA E:THR23 4.2 11.0 1.0 O E:HOH320 4.2 14.2 1.0 O3A E:GNP195 4.3 11.2 1.0 CG2 E:THR41 4.3 14.6 1.0 O1B E:GNP195 4.3 11.8 1.0 CG2 E:THR23 4.3 10.9 1.0 O2G E:GNP195 4.4 10.4 1.0 CG E:ASP74 4.5 15.2 1.0 PA E:GNP195 4.5 10.0 1.0 O E:THR75 4.6 14.8 1.0 O E:ILE39 4.7 15.3 1.0 C E:THR40 4.7 15.1 1.0 O1A E:GNP195 4.7 8.8 1.0 CE E:LYS22 4.9 14.2 1.0 CB E:LYS22 4.9 11.7 1.0 CA E:THR40 5.0 15.2 1.0

L.M.G.Chavas, K.Ihara, M.Kawasaki, S.Torii, T.Uejima, R.Kato, T.Izumi, S.Wakatsuki. Elucidation of RAB27 Recruitment By Its Effectors: Structure of RAB27A Bound to EXOPHILIN4/SLP2-A Structure V. 16 1468 2008.
ISSN: ISSN 0969-2126
PubMed: 18940603
DOI: 10.1016/J.STR.2008.07.015