Magnesium in PDB 3bk5: Crystal Structure of Putative Outer Membrane Lipoprotein-Sorting Protein Domain From Vibrio Parahaemolyticus

The structure of Crystal Structure of Putative Outer Membrane Lipoprotein-Sorting Protein Domain From Vibrio Parahaemolyticus, PDB code: 3bk5 was solved by R.Wu, J.Abdullah, A.Joachimiak, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.96 / 2.00
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	48.157, 128.874, 41.968, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 22.6

The binding sites of Magnesium atom in the Crystal Structure of Putative Outer Membrane Lipoprotein-Sorting Protein Domain From Vibrio Parahaemolyticus (pdb code 3bk5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Putative Outer Membrane Lipoprotein-Sorting Protein Domain From Vibrio Parahaemolyticus, PDB code: 3bk5:

Magnesium binding site 1 out of 1 in the Crystal Structure of Putative Outer Membrane Lipoprotein-Sorting Protein Domain From Vibrio Parahaemolyticus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Putative Outer Membrane Lipoprotein-Sorting Protein Domain From Vibrio Parahaemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg235 b:43.5 occ:1.00 NE2 A:HIS125 2.0 26.4 1.0 CE1 A:HIS125 2.3 23.7 1.0 OD1 A:ASP128 2.4 34.2 1.0 CG A:ASP128 3.0 32.3 1.0 N A:ASP128 3.2 28.2 1.0 O A:HOH434 3.3 35.3 1.0 O A:HOH435 3.3 48.6 1.0 CD2 A:HIS125 3.4 21.2 1.0 C A:LYS127 3.4 27.8 1.0 O A:HOH255 3.5 36.0 1.0 NZ A:LYS2 3.5 35.9 1.0 ND1 A:HIS125 3.6 27.6 1.0 OD2 A:ASP128 3.6 36.5 1.0 O A:HOH376 3.6 28.3 1.0 CA A:LYS127 3.7 27.0 1.0 CB A:ASP128 3.8 30.9 1.0 O A:LYS127 3.9 26.1 1.0 CA A:ASP128 3.9 30.1 1.0 CG A:HIS125 4.1 24.3 1.0 CE A:LYS2 4.3 34.7 1.0 N A:LYS127 4.4 26.7 1.0 CD1 A:PHE137 4.9 29.5 1.0

R.Wu, J.Abdullah, A.Joachimiak. The Crystal Structure of Putative Outer Membrane Lipoprotein-Sorting Protein Domain From Vibrio Parahaemolyticus. To Be Published.