Magnesium in PDB 3bsd: Light Harvesting Protein From Rc of Chlorobium Tepidum
Protein crystallography data
The structure of Light Harvesting Protein From Rc of Chlorobium Tepidum, PDB code: 3bsd
was solved by
N.Nelson,
F.Frolow,
A.Brn-Shem,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
44.82 /
2.30
|
|
Space group
|
I 41 3 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
167.695,
167.695,
167.695,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
17.4 /
27.3
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Light Harvesting Protein From Rc of Chlorobium Tepidum
(pdb code 3bsd). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the
Light Harvesting Protein From Rc of Chlorobium Tepidum, PDB code: 3bsd:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Magnesium binding site 1 out
of 9 in 3bsd
Go back to
Magnesium Binding Sites List in 3bsd
Magnesium binding site 1 out
of 9 in the Light Harvesting Protein From Rc of Chlorobium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Light Harvesting Protein From Rc of Chlorobium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg374
b:51.5
occ:0.33
|
O
|
A:HOH576
|
2.2
|
48.0
|
0.3
|
|
O
|
A:HOH578
|
2.2
|
45.6
|
0.3
|
|
O
|
A:HOH577
|
2.2
|
45.7
|
0.3
|
|
OE2
|
A:GLU195
|
3.6
|
68.5
|
1.0
|
|
O
|
A:HOH575
|
4.1
|
56.6
|
1.0
|
|
CD
|
A:GLU195
|
4.3
|
67.2
|
1.0
|
|
O
|
A:HOH413
|
4.4
|
38.4
|
1.0
|
|
O
|
A:HOH427
|
4.4
|
58.9
|
0.3
|
|
OE1
|
A:GLU195
|
4.5
|
60.1
|
1.0
|
|
Magnesium binding site 2 out
of 9 in 3bsd
Go back to
Magnesium Binding Sites List in 3bsd
Magnesium binding site 2 out
of 9 in the Light Harvesting Protein From Rc of Chlorobium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Light Harvesting Protein From Rc of Chlorobium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg367
b:50.9
occ:1.00
|
MG
|
A:BCL367
|
0.0
|
50.9
|
1.0
|
|
NB
|
A:BCL367
|
2.0
|
48.0
|
1.0
|
|
ND
|
A:BCL367
|
2.0
|
49.5
|
1.0
|
|
NC
|
A:BCL367
|
2.1
|
50.2
|
1.0
|
|
NA
|
A:BCL367
|
2.1
|
52.5
|
1.0
|
|
NE2
|
A:HIS111
|
2.6
|
47.5
|
1.0
|
|
C4D
|
A:BCL367
|
2.9
|
50.0
|
1.0
|
|
C1C
|
A:BCL367
|
2.9
|
49.7
|
1.0
|
|
C4C
|
A:BCL367
|
3.0
|
50.5
|
1.0
|
|
C4B
|
A:BCL367
|
3.0
|
48.8
|
1.0
|
|
C1B
|
A:BCL367
|
3.1
|
49.5
|
1.0
|
|
C4A
|
A:BCL367
|
3.1
|
51.7
|
1.0
|
|
C1D
|
A:BCL367
|
3.1
|
50.2
|
1.0
|
|
C1A
|
A:BCL367
|
3.1
|
52.8
|
1.0
|
|
CHC
|
A:BCL367
|
3.2
|
49.4
|
1.0
|
|
CE1
|
A:HIS111
|
3.4
|
49.4
|
1.0
|
|
CHA
|
A:BCL367
|
3.4
|
51.6
|
1.0
|
|
CHB
|
A:BCL367
|
3.4
|
48.7
|
1.0
|
|
CHD
|
A:BCL367
|
3.4
|
49.9
|
1.0
|
|
CD2
|
A:HIS111
|
3.6
|
49.3
|
1.0
|
|
C1
|
A:BCL367
|
3.7
|
56.5
|
1.0
|
|
C2
|
A:BCL367
|
3.8
|
52.8
|
1.0
|
|
O2A
|
A:BCL367
|
4.0
|
57.9
|
1.0
|
|
C3
|
A:BCL367
|
4.1
|
52.8
|
1.0
|
|
C3D
|
A:BCL367
|
4.1
|
49.5
|
1.0
|
|
C3B
|
A:BCL367
|
4.2
|
48.4
|
1.0
|
|
C2B
|
A:BCL367
|
4.2
|
50.0
|
1.0
|
|
C2D
|
A:BCL367
|
4.2
|
49.5
|
1.0
|
|
C2C
|
A:BCL367
|
4.3
|
51.6
|
1.0
|
|
C3C
|
A:BCL367
|
4.3
|
49.4
|
1.0
|
|
C3A
|
A:BCL367
|
4.4
|
51.3
|
1.0
|
|
C2A
|
A:BCL367
|
4.5
|
49.9
|
1.0
|
|
ND1
|
A:HIS111
|
4.5
|
51.8
|
1.0
|
|
C5
|
A:BCL367
|
4.5
|
49.3
|
1.0
|
|
CG
|
A:HIS111
|
4.6
|
50.7
|
1.0
|
|
C4
|
A:BCL367
|
4.6
|
50.6
|
1.0
|
|
C6
|
A:BCL367
|
4.7
|
53.2
|
1.0
|
|
CBD
|
A:BCL367
|
4.9
|
52.3
|
1.0
|
|
CG1
|
A:VAL104
|
5.0
|
53.1
|
1.0
|
|
CGA
|
A:BCL367
|
5.0
|
57.0
|
1.0
|
|
Magnesium binding site 3 out
of 9 in 3bsd
Go back to
Magnesium Binding Sites List in 3bsd
Magnesium binding site 3 out
of 9 in the Light Harvesting Protein From Rc of Chlorobium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Light Harvesting Protein From Rc of Chlorobium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg368
b:49.2
occ:1.00
|
MG
|
A:BCL368
|
0.0
|
49.2
|
1.0
|
|
ND
|
A:BCL368
|
2.0
|
47.4
|
1.0
|
|
NC
|
A:BCL368
|
2.1
|
46.2
|
1.0
|
|
NB
|
A:BCL368
|
2.1
|
47.1
|
1.0
|
|
NA
|
A:BCL368
|
2.1
|
46.4
|
1.0
|
|
O
|
A:HOH565
|
2.1
|
45.1
|
1.0
|
|
C4D
|
A:BCL368
|
2.9
|
49.6
|
1.0
|
|
C4C
|
A:BCL368
|
3.0
|
46.5
|
1.0
|
|
C1C
|
A:BCL368
|
3.0
|
48.0
|
1.0
|
|
C4A
|
A:BCL368
|
3.0
|
49.5
|
1.0
|
|
C4B
|
A:BCL368
|
3.1
|
46.8
|
1.0
|
|
C1D
|
A:BCL368
|
3.1
|
46.0
|
1.0
|
|
C1B
|
A:BCL368
|
3.1
|
48.1
|
1.0
|
|
C1A
|
A:BCL368
|
3.1
|
48.4
|
1.0
|
|
CHC
|
A:BCL368
|
3.3
|
47.4
|
1.0
|
|
CHB
|
A:BCL368
|
3.4
|
46.0
|
1.0
|
|
CHD
|
A:BCL368
|
3.4
|
48.0
|
1.0
|
|
CHA
|
A:BCL368
|
3.4
|
48.6
|
1.0
|
|
C12
|
A:BCL373
|
3.6
|
59.0
|
1.0
|
|
C13
|
A:BCL373
|
4.0
|
61.1
|
1.0
|
|
O
|
A:HOH494
|
4.1
|
50.5
|
1.0
|
|
C3D
|
A:BCL368
|
4.1
|
49.3
|
1.0
|
|
C2D
|
A:BCL368
|
4.2
|
46.4
|
1.0
|
|
C2B
|
A:BCL368
|
4.3
|
47.5
|
1.0
|
|
C3B
|
A:BCL368
|
4.3
|
47.1
|
1.0
|
|
C3C
|
A:BCL368
|
4.3
|
48.2
|
1.0
|
|
C2C
|
A:BCL368
|
4.3
|
46.5
|
1.0
|
|
C3A
|
A:BCL368
|
4.4
|
50.1
|
1.0
|
|
ND2
|
A:ASN80
|
4.4
|
43.5
|
1.0
|
|
C2A
|
A:BCL368
|
4.4
|
50.4
|
1.0
|
|
CG2
|
A:VAL75
|
4.5
|
43.7
|
1.0
|
|
C10
|
A:BCL373
|
4.6
|
51.4
|
1.0
|
|
C11
|
A:BCL373
|
4.7
|
52.4
|
1.0
|
|
C14
|
A:BCL373
|
4.8
|
62.2
|
1.0
|
|
CBD
|
A:BCL368
|
4.9
|
50.0
|
1.0
|
|
Magnesium binding site 4 out
of 9 in 3bsd
Go back to
Magnesium Binding Sites List in 3bsd
Magnesium binding site 4 out
of 9 in the Light Harvesting Protein From Rc of Chlorobium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Light Harvesting Protein From Rc of Chlorobium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg369
b:45.2
occ:1.00
|
MG
|
A:BCL369
|
0.0
|
45.2
|
1.0
|
|
NB
|
A:BCL369
|
2.0
|
44.0
|
1.0
|
|
ND
|
A:BCL369
|
2.1
|
44.0
|
1.0
|
|
NC
|
A:BCL369
|
2.1
|
44.3
|
1.0
|
|
NA
|
A:BCL369
|
2.1
|
45.2
|
1.0
|
|
NE2
|
A:HIS298
|
2.3
|
53.4
|
1.0
|
|
C4D
|
A:BCL369
|
3.0
|
43.1
|
1.0
|
|
C1C
|
A:BCL369
|
3.0
|
46.0
|
1.0
|
|
C4C
|
A:BCL369
|
3.0
|
41.5
|
1.0
|
|
C4B
|
A:BCL369
|
3.1
|
44.5
|
1.0
|
|
C1B
|
A:BCL369
|
3.1
|
44.8
|
1.0
|
|
C4A
|
A:BCL369
|
3.1
|
43.5
|
1.0
|
|
C1D
|
A:BCL369
|
3.1
|
41.4
|
1.0
|
|
C1A
|
A:BCL369
|
3.1
|
41.7
|
1.0
|
|
CE1
|
A:HIS298
|
3.2
|
46.8
|
1.0
|
|
CD2
|
A:HIS298
|
3.2
|
52.6
|
1.0
|
|
CHC
|
A:BCL369
|
3.3
|
46.2
|
1.0
|
|
CHB
|
A:BCL369
|
3.4
|
43.4
|
1.0
|
|
CHD
|
A:BCL369
|
3.4
|
35.9
|
1.0
|
|
CHA
|
A:BCL369
|
3.5
|
41.7
|
1.0
|
|
C3D
|
A:BCL369
|
4.2
|
42.7
|
1.0
|
|
C2B
|
A:BCL369
|
4.2
|
43.0
|
1.0
|
|
C3B
|
A:BCL369
|
4.2
|
44.4
|
1.0
|
|
C2D
|
A:BCL369
|
4.3
|
40.8
|
1.0
|
|
C2C
|
A:BCL369
|
4.3
|
45.1
|
1.0
|
|
ND1
|
A:HIS298
|
4.3
|
47.4
|
1.0
|
|
C3C
|
A:BCL369
|
4.3
|
41.7
|
1.0
|
|
CG
|
A:HIS298
|
4.4
|
52.8
|
1.0
|
|
C3A
|
A:BCL369
|
4.4
|
43.0
|
1.0
|
|
C2A
|
A:BCL369
|
4.4
|
45.4
|
1.0
|
|
CBC
|
A:BCL370
|
4.5
|
46.4
|
1.0
|
|
CD1
|
A:ILE265
|
4.6
|
44.4
|
1.0
|
|
CBD
|
A:BCL369
|
4.9
|
43.5
|
1.0
|
|
Magnesium binding site 5 out
of 9 in 3bsd
Go back to
Magnesium Binding Sites List in 3bsd
Magnesium binding site 5 out
of 9 in the Light Harvesting Protein From Rc of Chlorobium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Light Harvesting Protein From Rc of Chlorobium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg370
b:45.9
occ:1.00
|
MG
|
A:BCL370
|
0.0
|
45.9
|
1.0
|
|
ND
|
A:BCL370
|
2.0
|
45.2
|
1.0
|
|
NC
|
A:BCL370
|
2.1
|
44.5
|
1.0
|
|
NB
|
A:BCL370
|
2.1
|
45.6
|
1.0
|
|
NA
|
A:BCL370
|
2.1
|
45.5
|
1.0
|
|
NE2
|
A:HIS290
|
2.3
|
48.8
|
1.0
|
|
C4D
|
A:BCL370
|
2.9
|
46.0
|
1.0
|
|
C1C
|
A:BCL370
|
3.0
|
46.2
|
1.0
|
|
C4A
|
A:BCL370
|
3.0
|
44.4
|
1.0
|
|
C4C
|
A:BCL370
|
3.1
|
45.4
|
1.0
|
|
C4B
|
A:BCL370
|
3.1
|
45.8
|
1.0
|
|
C1D
|
A:BCL370
|
3.1
|
45.9
|
1.0
|
|
C1B
|
A:BCL370
|
3.1
|
44.1
|
1.0
|
|
C1A
|
A:BCL370
|
3.1
|
45.1
|
1.0
|
|
CE1
|
A:HIS290
|
3.1
|
48.7
|
1.0
|
|
CHC
|
A:BCL370
|
3.4
|
45.1
|
1.0
|
|
CD2
|
A:HIS290
|
3.4
|
52.8
|
1.0
|
|
CHB
|
A:BCL370
|
3.4
|
42.3
|
1.0
|
|
CHA
|
A:BCL370
|
3.4
|
45.0
|
1.0
|
|
CHD
|
A:BCL370
|
3.5
|
41.9
|
1.0
|
|
C4
|
A:BCL370
|
3.9
|
41.9
|
1.0
|
|
C3D
|
A:BCL370
|
4.1
|
46.0
|
1.0
|
|
C2D
|
A:BCL370
|
4.2
|
45.3
|
1.0
|
|
C2B
|
A:BCL370
|
4.2
|
43.5
|
1.0
|
|
C3B
|
A:BCL370
|
4.2
|
44.1
|
1.0
|
|
ND1
|
A:HIS290
|
4.3
|
46.3
|
1.0
|
|
O2A
|
A:BCL370
|
4.3
|
41.8
|
1.0
|
|
C2C
|
A:BCL370
|
4.4
|
44.3
|
1.0
|
|
C3A
|
A:BCL370
|
4.4
|
44.9
|
1.0
|
|
C3C
|
A:BCL370
|
4.4
|
43.9
|
1.0
|
|
C2A
|
A:BCL370
|
4.4
|
47.6
|
1.0
|
|
CG
|
A:HIS290
|
4.4
|
49.9
|
1.0
|
|
C3
|
A:BCL370
|
4.6
|
36.1
|
1.0
|
|
C1
|
A:BCL370
|
4.6
|
41.3
|
1.0
|
|
C2
|
A:BCL370
|
4.8
|
39.6
|
1.0
|
|
CGA
|
A:BCL370
|
4.9
|
42.4
|
1.0
|
|
CBD
|
A:BCL370
|
4.9
|
45.2
|
1.0
|
|
CMA
|
A:BCL370
|
5.0
|
39.7
|
1.0
|
|
CD2
|
A:LEU295
|
5.0
|
47.9
|
1.0
|
|
C4
|
A:BCL371
|
5.0
|
47.3
|
1.0
|
|
Magnesium binding site 6 out
of 9 in 3bsd
Go back to
Magnesium Binding Sites List in 3bsd
Magnesium binding site 6 out
of 9 in the Light Harvesting Protein From Rc of Chlorobium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Light Harvesting Protein From Rc of Chlorobium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg371
b:48.8
occ:1.00
|
MG
|
A:BCL371
|
0.0
|
48.8
|
1.0
|
|
NB
|
A:BCL371
|
2.0
|
48.2
|
1.0
|
|
ND
|
A:BCL371
|
2.0
|
49.6
|
1.0
|
|
NC
|
A:BCL371
|
2.1
|
48.0
|
1.0
|
|
NA
|
A:BCL371
|
2.1
|
46.8
|
1.0
|
|
O
|
A:LEU242
|
2.1
|
55.4
|
1.0
|
|
C1C
|
A:BCL371
|
2.9
|
47.1
|
1.0
|
|
C4D
|
A:BCL371
|
2.9
|
49.1
|
1.0
|
|
C4C
|
A:BCL371
|
3.0
|
45.7
|
1.0
|
|
C4A
|
A:BCL371
|
3.0
|
43.7
|
1.0
|
|
C4B
|
A:BCL371
|
3.0
|
49.7
|
1.0
|
|
C1B
|
A:BCL371
|
3.0
|
49.6
|
1.0
|
|
C1D
|
A:BCL371
|
3.1
|
48.0
|
1.0
|
|
C1A
|
A:BCL371
|
3.1
|
46.1
|
1.0
|
|
CHC
|
A:BCL371
|
3.1
|
47.2
|
1.0
|
|
C
|
A:LEU242
|
3.3
|
54.8
|
1.0
|
|
CHB
|
A:BCL371
|
3.3
|
48.6
|
1.0
|
|
CHD
|
A:BCL371
|
3.4
|
45.4
|
1.0
|
|
CHA
|
A:BCL371
|
3.5
|
47.3
|
1.0
|
|
CA
|
A:LEU242
|
3.9
|
51.5
|
1.0
|
|
CB
|
A:LEU242
|
4.0
|
50.8
|
1.0
|
|
C3D
|
A:BCL371
|
4.1
|
48.5
|
1.0
|
|
C3B
|
A:BCL371
|
4.2
|
49.2
|
1.0
|
|
C2B
|
A:BCL371
|
4.2
|
50.9
|
1.0
|
|
C13
|
A:BCL372
|
4.2
|
54.9
|
1.0
|
|
C2D
|
A:BCL371
|
4.2
|
46.0
|
1.0
|
|
C2C
|
A:BCL371
|
4.3
|
49.2
|
1.0
|
|
C3C
|
A:BCL371
|
4.3
|
47.5
|
1.0
|
|
C3A
|
A:BCL371
|
4.3
|
47.7
|
1.0
|
|
CD1
|
A:LEU242
|
4.3
|
49.1
|
1.0
|
|
C11
|
A:BCL372
|
4.4
|
58.0
|
1.0
|
|
N
|
A:PHE243
|
4.4
|
57.4
|
1.0
|
|
C2A
|
A:BCL371
|
4.4
|
47.9
|
1.0
|
|
C16
|
A:BCL372
|
4.6
|
51.8
|
1.0
|
|
CA
|
A:PHE243
|
4.7
|
56.4
|
1.0
|
|
CG
|
A:LEU242
|
4.8
|
52.5
|
1.0
|
|
C12
|
A:BCL372
|
4.8
|
58.9
|
1.0
|
|
CBD
|
A:BCL371
|
5.0
|
46.4
|
1.0
|
|
C14
|
A:BCL372
|
5.0
|
55.4
|
1.0
|
|
Magnesium binding site 7 out
of 9 in 3bsd
Go back to
Magnesium Binding Sites List in 3bsd
Magnesium binding site 7 out
of 9 in the Light Harvesting Protein From Rc of Chlorobium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Light Harvesting Protein From Rc of Chlorobium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg372
b:52.9
occ:1.00
|
MG
|
A:BCL372
|
0.0
|
52.9
|
1.0
|
|
ND
|
A:BCL372
|
2.0
|
52.8
|
1.0
|
|
NC
|
A:BCL372
|
2.0
|
48.2
|
1.0
|
|
NA
|
A:BCL372
|
2.0
|
50.3
|
1.0
|
|
NB
|
A:BCL372
|
2.1
|
46.4
|
1.0
|
|
NE2
|
A:HIS146
|
2.5
|
53.8
|
1.0
|
|
C4D
|
A:BCL372
|
2.9
|
53.5
|
1.0
|
|
C4C
|
A:BCL372
|
3.0
|
50.6
|
1.0
|
|
C1C
|
A:BCL372
|
3.0
|
48.4
|
1.0
|
|
C4A
|
A:BCL372
|
3.0
|
51.3
|
1.0
|
|
C1B
|
A:BCL372
|
3.1
|
50.5
|
1.0
|
|
C1D
|
A:BCL372
|
3.1
|
53.1
|
1.0
|
|
C4B
|
A:BCL372
|
3.1
|
50.4
|
1.0
|
|
C1A
|
A:BCL372
|
3.1
|
54.0
|
1.0
|
|
CHD
|
A:BCL372
|
3.2
|
51.6
|
1.0
|
|
CHB
|
A:BCL372
|
3.3
|
50.7
|
1.0
|
|
CHC
|
A:BCL372
|
3.4
|
47.9
|
1.0
|
|
CD2
|
A:HIS146
|
3.4
|
54.3
|
1.0
|
|
CE1
|
A:HIS146
|
3.5
|
52.9
|
1.0
|
|
CHA
|
A:BCL372
|
3.5
|
54.1
|
1.0
|
|
C3D
|
A:BCL372
|
4.1
|
53.8
|
1.0
|
|
C2D
|
A:BCL372
|
4.2
|
53.0
|
1.0
|
|
C2B
|
A:BCL372
|
4.2
|
49.6
|
1.0
|
|
C3B
|
A:BCL372
|
4.3
|
47.4
|
1.0
|
|
C3C
|
A:BCL372
|
4.3
|
51.1
|
1.0
|
|
C2C
|
A:BCL372
|
4.3
|
50.9
|
1.0
|
|
C3A
|
A:BCL372
|
4.4
|
52.1
|
1.0
|
|
C2A
|
A:BCL372
|
4.4
|
51.1
|
1.0
|
|
C20
|
A:BCL369
|
4.5
|
46.5
|
1.0
|
|
CG
|
A:HIS146
|
4.6
|
53.6
|
1.0
|
|
ND1
|
A:HIS146
|
4.6
|
51.3
|
1.0
|
|
C19
|
A:BCL369
|
4.6
|
47.6
|
1.0
|
|
C17
|
A:BCL369
|
4.8
|
51.5
|
1.0
|
|
C18
|
A:BCL369
|
4.9
|
48.3
|
1.0
|
|
CG2
|
A:VAL119
|
4.9
|
53.7
|
1.0
|
|
CBD
|
A:BCL372
|
4.9
|
52.3
|
1.0
|
|
Magnesium binding site 8 out
of 9 in 3bsd
Go back to
Magnesium Binding Sites List in 3bsd
Magnesium binding site 8 out
of 9 in the Light Harvesting Protein From Rc of Chlorobium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Light Harvesting Protein From Rc of Chlorobium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg373
b:49.1
occ:1.00
|
MG
|
A:BCL373
|
0.0
|
49.1
|
1.0
|
|
NB
|
A:BCL373
|
2.0
|
44.8
|
1.0
|
|
ND
|
A:BCL373
|
2.1
|
42.8
|
1.0
|
|
NC
|
A:BCL373
|
2.1
|
47.5
|
1.0
|
|
NA
|
A:BCL373
|
2.1
|
44.4
|
1.0
|
|
ND1
|
A:HIS297
|
2.3
|
56.5
|
1.0
|
|
C4D
|
A:BCL373
|
3.0
|
44.6
|
1.0
|
|
C4C
|
A:BCL373
|
3.0
|
42.4
|
1.0
|
|
C4B
|
A:BCL373
|
3.0
|
48.7
|
1.0
|
|
C1C
|
A:BCL373
|
3.0
|
47.6
|
1.0
|
|
C1D
|
A:BCL373
|
3.1
|
44.6
|
1.0
|
|
C1B
|
A:BCL373
|
3.1
|
45.3
|
1.0
|
|
C4A
|
A:BCL373
|
3.1
|
43.9
|
1.0
|
|
C1A
|
A:BCL373
|
3.1
|
40.5
|
1.0
|
|
CE1
|
A:HIS297
|
3.3
|
54.6
|
1.0
|
|
CHD
|
A:BCL373
|
3.3
|
40.7
|
1.0
|
|
CHC
|
A:BCL373
|
3.3
|
45.6
|
1.0
|
|
CG
|
A:HIS297
|
3.4
|
53.1
|
1.0
|
|
CHB
|
A:BCL373
|
3.4
|
46.5
|
1.0
|
|
C4
|
A:BCL369
|
3.4
|
46.4
|
1.0
|
|
CHA
|
A:BCL373
|
3.5
|
45.9
|
1.0
|
|
CB
|
A:HIS297
|
3.7
|
55.5
|
1.0
|
|
C3
|
A:BCL369
|
4.2
|
49.0
|
1.0
|
|
C3D
|
A:BCL373
|
4.2
|
39.3
|
1.0
|
|
C2D
|
A:BCL373
|
4.2
|
47.1
|
1.0
|
|
C2B
|
A:BCL373
|
4.2
|
43.8
|
1.0
|
|
C3B
|
A:BCL373
|
4.2
|
45.9
|
1.0
|
|
C3C
|
A:BCL373
|
4.3
|
45.8
|
1.0
|
|
C2C
|
A:BCL373
|
4.4
|
44.6
|
1.0
|
|
NE2
|
A:HIS297
|
4.4
|
49.7
|
1.0
|
|
C3A
|
A:BCL373
|
4.4
|
41.5
|
1.0
|
|
C2A
|
A:BCL373
|
4.4
|
41.7
|
1.0
|
|
CD2
|
A:HIS297
|
4.5
|
50.3
|
1.0
|
|
CG2
|
A:ILE293
|
4.6
|
53.4
|
1.0
|
|
C5
|
A:BCL369
|
4.8
|
49.3
|
1.0
|
|
C1
|
A:BCL369
|
4.8
|
42.3
|
1.0
|
|
C2
|
A:BCL369
|
4.9
|
45.1
|
1.0
|
|
CBD
|
A:BCL373
|
5.0
|
44.5
|
1.0
|
|
Magnesium binding site 9 out
of 9 in 3bsd
Go back to
Magnesium Binding Sites List in 3bsd
Magnesium binding site 9 out
of 9 in the Light Harvesting Protein From Rc of Chlorobium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Light Harvesting Protein From Rc of Chlorobium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg400
b:75.7
occ:1.00
|
MG
|
A:BCL400
|
0.0
|
75.7
|
1.0
|
|
NC
|
A:BCL400
|
2.1
|
75.6
|
1.0
|
|
ND
|
A:BCL400
|
2.1
|
75.5
|
1.0
|
|
NA
|
A:BCL400
|
2.1
|
76.5
|
1.0
|
|
NB
|
A:BCL400
|
2.1
|
76.6
|
1.0
|
|
O
|
A:TYR124
|
2.2
|
62.2
|
1.0
|
|
C4D
|
A:BCL400
|
2.9
|
74.8
|
1.0
|
|
C4C
|
A:BCL400
|
2.9
|
73.5
|
1.0
|
|
C1C
|
A:BCL400
|
3.0
|
74.8
|
1.0
|
|
C4A
|
A:BCL400
|
3.0
|
77.8
|
1.0
|
|
C1B
|
A:BCL400
|
3.1
|
78.5
|
1.0
|
|
C4B
|
A:BCL400
|
3.1
|
76.0
|
1.0
|
|
C1A
|
A:BCL400
|
3.1
|
76.4
|
1.0
|
|
C1D
|
A:BCL400
|
3.1
|
74.7
|
1.0
|
|
CHC
|
A:BCL400
|
3.2
|
75.5
|
1.0
|
|
CHD
|
A:BCL400
|
3.3
|
72.7
|
1.0
|
|
CHB
|
A:BCL400
|
3.3
|
78.1
|
1.0
|
|
C
|
A:TYR124
|
3.4
|
57.9
|
1.0
|
|
CHA
|
A:BCL400
|
3.4
|
74.1
|
1.0
|
|
C3D
|
A:BCL400
|
4.1
|
73.4
|
1.0
|
|
C2B
|
A:BCL400
|
4.2
|
78.7
|
1.0
|
|
C3B
|
A:BCL400
|
4.2
|
76.8
|
1.0
|
|
C2D
|
A:BCL400
|
4.2
|
74.5
|
1.0
|
|
C3C
|
A:BCL400
|
4.3
|
74.0
|
1.0
|
|
C3A
|
A:BCL400
|
4.3
|
78.0
|
1.0
|
|
N
|
A:TYR125
|
4.3
|
58.3
|
1.0
|
|
C2C
|
A:BCL400
|
4.3
|
74.5
|
1.0
|
|
CA
|
A:TYR125
|
4.3
|
57.5
|
1.0
|
|
CA
|
A:TYR124
|
4.3
|
57.3
|
1.0
|
|
C2A
|
A:BCL400
|
4.3
|
77.5
|
1.0
|
|
CB
|
A:TYR125
|
4.7
|
57.9
|
1.0
|
|
CB
|
A:TYR124
|
4.8
|
57.4
|
1.0
|
|
CBD
|
A:BCL400
|
4.9
|
74.5
|
1.0
|
|
Reference:
A.Ben-Shem,
F.Frolow,
N.Nelson.
Evolution of Photosystem I - From Symmetry Through Pseudo-Symmetry to Asymmetry. Febs Lett. V. 564 274 2004.
ISSN: ISSN 0014-5793
PubMed: 15111109
DOI: 10.1016/S0014-5793(04)00360-6
Page generated: Mon Dec 14 07:56:23 2020
|
