Magnesium in PDB 3bwv: Crystal Structure of Deoxyribonucleotidase-Like Protein (NP_764060.1) From Staphylococcus Epidermidis Atcc 12228 at 1.55 A Resolution

The structure of Crystal Structure of Deoxyribonucleotidase-Like Protein (NP_764060.1) From Staphylococcus Epidermidis Atcc 12228 at 1.55 A Resolution, PDB code: 3bwv was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.24 / 1.55
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	39.310, 40.270, 55.310, 71.93, 75.08, 83.62
R / Rfree (%)	18.2 / 22.3

The structure of Crystal Structure of Deoxyribonucleotidase-Like Protein (NP_764060.1) From Staphylococcus Epidermidis Atcc 12228 at 1.55 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Deoxyribonucleotidase-Like Protein (NP_764060.1) From Staphylococcus Epidermidis Atcc 12228 at 1.55 A Resolution (pdb code 3bwv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Deoxyribonucleotidase-Like Protein (NP_764060.1) From Staphylococcus Epidermidis Atcc 12228 at 1.55 A Resolution, PDB code: 3bwv:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Deoxyribonucleotidase-Like Protein (NP_764060.1) From Staphylococcus Epidermidis Atcc 12228 at 1.55 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Deoxyribonucleotidase-Like Protein (NP_764060.1) From Staphylococcus Epidermidis Atcc 12228 at 1.55 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg300 b:20.8 occ:1.00 OD2 A:ASP9 2.0 22.1 1.0 O A:HOH378 2.0 19.3 1.0 O A:HOH384 2.0 22.2 1.0 OD1 A:ASP135 2.1 20.6 1.0 O A:ASP11 2.1 17.5 1.0 O A:HOH374 2.1 19.2 1.0 CG A:ASP9 3.0 19.9 1.0 CG A:ASP135 3.1 22.3 1.0 C A:ASP11 3.3 19.7 1.0 OD2 A:ASP135 3.4 20.5 1.0 OD1 A:ASP9 3.5 18.7 1.0 CA A:ASP11 3.9 19.4 1.0 N A:ASP11 4.0 19.3 1.0 OD1 A:ASP134 4.0 27.3 1.0 CB A:ASP11 4.1 20.3 1.0 CB A:ASP9 4.3 17.4 1.0 N A:GLU12 4.4 17.4 1.0 CB A:ASP135 4.4 19.2 1.0 CB A:GLU12 4.4 18.1 1.0 CG2 A:VAL13 4.5 17.1 1.0 O A:HOH308 4.5 27.9 1.0 N A:ASP135 4.5 18.3 1.0 O A:HOH332 4.5 32.6 1.0 O A:HOH388 4.8 18.8 1.0 C A:MSE10 4.8 20.6 1.0 CA A:GLU12 4.8 17.9 1.0 CG A:ASP134 4.9 22.9 1.0 CA A:ASP135 4.9 18.3 1.0 C A:GLU12 5.0 19.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Deoxyribonucleotidase-Like Protein (NP_764060.1) From Staphylococcus Epidermidis Atcc 12228 at 1.55 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Deoxyribonucleotidase-Like Protein (NP_764060.1) From Staphylococcus Epidermidis Atcc 12228 at 1.55 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg300 b:17.0 occ:1.00 OD1 B:ASP135 2.1 17.1 1.0 O B:ASP11 2.1 18.9 1.0 OD2 B:ASP9 2.1 21.8 1.0 O B:HOH387 2.1 20.1 1.0 O B:HOH386 2.1 19.2 1.0 O B:HOH383 2.2 20.5 1.0 CG B:ASP135 3.1 17.7 1.0 CG B:ASP9 3.1 20.4 1.0 C B:ASP11 3.2 19.5 1.0 OD2 B:ASP135 3.4 19.6 1.0 OD1 B:ASP9 3.5 21.9 1.0 CA B:ASP11 3.9 20.0 1.0 CB B:ASP11 4.0 21.0 1.0 OD1 B:ASP134 4.0 18.1 1.0 N B:ASP11 4.1 18.4 1.0 CG2 B:VAL13 4.2 17.8 1.0 CB B:GLU12 4.3 17.8 1.0 N B:GLU12 4.3 19.2 1.0 CB B:ASP9 4.4 19.0 1.0 CB B:ASP135 4.4 17.7 1.0 N B:ASP135 4.5 16.8 1.0 O B:HOH323 4.5 33.0 1.0 O B:HOH317 4.5 26.0 1.0 CA B:GLU12 4.7 18.6 1.0 C B:MSE10 4.8 18.7 1.0 CG B:ASP134 4.9 21.3 1.0 O B:HOH393 4.9 14.8 1.0 CA B:ASP135 4.9 17.2 1.0 CG B:GLU12 4.9 21.3 1.0 C B:GLU12 5.0 17.7 1.0 N B:VAL13 5.0 16.8 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.