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Magnesium in PDB 3c2t: Evolution of Chlorella Virus Dutpase

Enzymatic activity of Evolution of Chlorella Virus Dutpase

All present enzymatic activity of Evolution of Chlorella Virus Dutpase:
3.6.1.23;

Protein crystallography data

The structure of Evolution of Chlorella Virus Dutpase, PDB code: 3c2t was solved by M.Yamanishi, K.Homma, Y.Zhang, L.V.J.Etten, H.Moriyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.42 / 3.00
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 105.678, 105.678, 105.678, 90.00, 90.00, 90.00
R / Rfree (%) 24.5 / 28.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Evolution of Chlorella Virus Dutpase (pdb code 3c2t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Evolution of Chlorella Virus Dutpase, PDB code: 3c2t:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3c2t

Go back to Magnesium Binding Sites List in 3c2t
Magnesium binding site 1 out of 2 in the Evolution of Chlorella Virus Dutpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Evolution of Chlorella Virus Dutpase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg998

b:6.9
occ:0.33
OD1 A:ASP73 3.1 18.4 1.0
CG A:ASP73 4.2 16.8 1.0
CB A:ASP73 4.8 14.8 1.0
CD1 A:TYR92 4.8 16.8 1.0

Magnesium binding site 2 out of 2 in 3c2t

Go back to Magnesium Binding Sites List in 3c2t
Magnesium binding site 2 out of 2 in the Evolution of Chlorella Virus Dutpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Evolution of Chlorella Virus Dutpase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg999

b:3.4
occ:0.33
OD1 B:ASP73 3.5 22.6 1.0
CD2 B:TYR92 4.5 14.9 1.0
CG B:ASP73 4.6 20.0 1.0
CE2 B:TYR92 4.6 15.9 1.0
CB B:ASP73 5.0 17.7 1.0

Reference:

K.Homma, H.Moriyama. Crystallization and Crystal-Packing Studies of Chlorella Virus Deoxyuridine Triphosphatase. Acta Crystallogr.,Sect.F V. 65 1030 2009.
ISSN: ESSN 1744-3091
PubMed: 19851015
DOI: 10.1107/S1744309109034459
Page generated: Mon Dec 14 07:56:39 2020

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