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Magnesium in PDB 3cbt: Crystal Structure of SC4828, A Unique Phosphatase From Streptomyces Coelicolor

Enzymatic activity of Crystal Structure of SC4828, A Unique Phosphatase From Streptomyces Coelicolor

All present enzymatic activity of Crystal Structure of SC4828, A Unique Phosphatase From Streptomyces Coelicolor:
3.1.3.5;

Protein crystallography data

The structure of Crystal Structure of SC4828, A Unique Phosphatase From Streptomyces Coelicolor, PDB code: 3cbt was solved by A.U.Singer, X.Xu, C.Chang, H.Zheng, A.M.Edwards, A.Joachimiak, A.F.Yakunin, A.Savchenko, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.87 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.738, 77.271, 80.044, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 21.5

Other elements in 3cbt:

The structure of Crystal Structure of SC4828, A Unique Phosphatase From Streptomyces Coelicolor also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of SC4828, A Unique Phosphatase From Streptomyces Coelicolor (pdb code 3cbt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of SC4828, A Unique Phosphatase From Streptomyces Coelicolor, PDB code: 3cbt:

Magnesium binding site 1 out of 1 in 3cbt

Go back to Magnesium Binding Sites List in 3cbt
Magnesium binding site 1 out of 1 in the Crystal Structure of SC4828, A Unique Phosphatase From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of SC4828, A Unique Phosphatase From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:24.1
occ:1.00
 O A:HOH797 2.1 23.1 1.0
O A:HOH799 2.1 25.7 1.0
OD1 A:ASN133 2.1 19.5 1.0
OD1 A:ASP153 2.2 20.8 1.0
OD1 A:ASP149 2.3 26.4 1.0
CG A:ASN133 3.1 16.7 1.0
CG A:ASP153 3.1 19.0 1.0
CG A:ASP149 3.2 19.4 1.0
OD2 A:ASP153 3.4 26.3 1.0
OD2 A:ASP149 3.4 20.5 1.0
ND2 A:ASN133 3.5 21.1 1.0
O A:HOH794 3.6 39.5 1.0
O A:PHE151 4.0 19.2 1.0
O A:LEU152 4.3 14.4 1.0
CB A:ASN133 4.3 11.1 1.0
C A:PHE151 4.3 17.5 1.0
O A:LEU134 4.4 11.7 1.0
CA A:ASN133 4.4 10.7 1.0
N A:PHE151 4.5 15.3 1.0
CB A:ASP153 4.6 15.2 1.0
CA A:PHE151 4.6 16.4 1.0
CB A:ASP149 4.6 17.6 1.0
C A:LEU152 4.7 13.8 1.0
N A:LEU134 4.8 10.0 1.0
O A:HOH802 4.8 36.2 1.0
C A:ASN133 4.8 10.5 1.0
O A:HOH551 4.9 28.9 1.0
N A:LEU152 5.0 15.9 1.0

Reference:

A.U.Singer, M.Proudfoot, G.Brown, X.Xu, C.Chang, H.Zhang, A.M.Edwards, A.Joachimiak, A.Savchenko, A.F.Yakunin. Crystal Structure of SC4828, A Unique Phosphatase From Streptomyces Coelicolor. To Be Published.
Page generated: Wed Aug 14 09:34:49 2024

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