Magnesium in PDB 3cd6: Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
Protein crystallography data
The structure of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin, PDB code: 3cd6
was solved by
G.Blaha,
G.Gurel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.95 /
2.75
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
212.805,
299.997,
576.002,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.3 /
24.1
|
Other elements in 3cd6:
The structure of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
93;
Binding sites:
The binding sites of Magnesium atom in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
(pdb code 3cd6). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 93 binding sites of Magnesium where determined in the
Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin, PDB code: 3cd6:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 93 in 3cd6
Go back to
Magnesium Binding Sites List in 3cd6
Magnesium binding site 1 out
of 93 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg8050
b:60.4
occ:1.00
|
O
|
A:HOH8969
|
2.6
|
56.4
|
1.0
|
O
|
0:HOH9952
|
2.9
|
58.0
|
1.0
|
O
|
A:HOH8942
|
2.9
|
60.5
|
1.0
|
O
|
A:HOH9015
|
3.0
|
64.6
|
1.0
|
O
|
A:HOH9044
|
3.0
|
36.0
|
1.0
|
O
|
A:HOH8973
|
3.2
|
70.5
|
1.0
|
O
|
A:ARG17
|
3.2
|
41.3
|
1.0
|
O
|
A:THR15
|
3.2
|
45.6
|
1.0
|
O
|
A:SER14
|
3.6
|
46.2
|
1.0
|
O2'
|
0:G782
|
3.8
|
35.1
|
1.0
|
C
|
A:THR15
|
3.9
|
45.0
|
1.0
|
O3'
|
0:G782
|
4.2
|
32.8
|
1.0
|
CA
|
A:THR15
|
4.3
|
44.4
|
1.0
|
O
|
A:ARG182
|
4.3
|
56.3
|
1.0
|
C
|
A:ARG17
|
4.4
|
42.4
|
1.0
|
C4'
|
0:G782
|
4.6
|
32.4
|
1.0
|
C
|
A:SER14
|
4.6
|
45.0
|
1.0
|
N
|
A:ARG17
|
4.7
|
43.4
|
1.0
|
N
|
A:PHE16
|
4.7
|
44.2
|
1.0
|
O
|
A:THR184
|
4.8
|
54.2
|
1.0
|
C3'
|
0:G782
|
4.8
|
33.5
|
1.0
|
C2'
|
0:G782
|
4.9
|
33.7
|
1.0
|
N
|
A:THR15
|
5.0
|
44.3
|
1.0
|
O
|
0:HOH9372
|
5.0
|
76.5
|
1.0
|
C
|
A:PHE16
|
5.0
|
43.0
|
1.0
|
|
Magnesium binding site 2 out
of 93 in 3cd6
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Magnesium Binding Sites List in 3cd6
Magnesium binding site 2 out
of 93 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg8051
b:81.8
occ:1.00
|
OP2
|
0:G1873
|
2.8
|
44.7
|
1.0
|
NH2
|
A:ARG120
|
2.9
|
55.6
|
1.0
|
N
|
A:LEU27
|
3.1
|
75.1
|
1.0
|
O
|
A:LEU27
|
3.1
|
80.6
|
1.0
|
NH1
|
A:ARG120
|
3.2
|
58.1
|
1.0
|
C
|
A:ASP26
|
3.3
|
75.4
|
1.0
|
OP1
|
0:G1873
|
3.3
|
48.6
|
1.0
|
C
|
A:LEU27
|
3.4
|
79.3
|
1.0
|
O
|
A:HOH8980
|
3.4
|
0.3
|
1.0
|
CZ
|
A:ARG120
|
3.4
|
55.7
|
1.0
|
OD2
|
A:ASP26
|
3.4
|
81.0
|
1.0
|
P
|
0:G1873
|
3.5
|
45.8
|
1.0
|
SR
|
A:SR8930
|
3.5
|
0.6
|
1.0
|
CA
|
A:LEU27
|
3.6
|
76.5
|
1.0
|
CG
|
A:ASP26
|
3.7
|
79.7
|
1.0
|
CA
|
A:ASP26
|
3.8
|
75.6
|
1.0
|
O
|
A:ASP26
|
3.9
|
75.8
|
1.0
|
CG
|
A:GLU28
|
3.9
|
86.2
|
1.0
|
O
|
0:HOH5238
|
4.0
|
76.5
|
1.0
|
O
|
0:HOH3013
|
4.0
|
80.2
|
1.0
|
OD1
|
A:ASP26
|
4.1
|
80.2
|
1.0
|
N
|
A:GLU28
|
4.1
|
81.6
|
1.0
|
CB
|
A:LEU27
|
4.3
|
73.3
|
1.0
|
O3'
|
0:C1872
|
4.3
|
47.0
|
1.0
|
CB
|
A:ASP26
|
4.3
|
77.6
|
1.0
|
NE
|
A:ARG120
|
4.7
|
55.3
|
1.0
|
CA
|
A:GLU28
|
4.7
|
84.3
|
1.0
|
OE1
|
A:GLU28
|
4.8
|
88.4
|
1.0
|
O5'
|
0:G1873
|
4.9
|
45.5
|
1.0
|
CD
|
A:GLU28
|
4.9
|
88.3
|
1.0
|
CB
|
A:GLU28
|
4.9
|
84.9
|
1.0
|
|
Magnesium binding site 3 out
of 93 in 3cd6
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Magnesium Binding Sites List in 3cd6
Magnesium binding site 3 out
of 93 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg8042
b:56.0
occ:1.00
|
O
|
B:HOH9084
|
2.6
|
43.2
|
1.0
|
O
|
U:HOH2221
|
2.7
|
63.5
|
1.0
|
O
|
0:HOH6464
|
2.8
|
57.2
|
1.0
|
O
|
0:HOH3827
|
2.8
|
60.0
|
1.0
|
O
|
0:HOH7767
|
3.1
|
86.5
|
1.0
|
OXT
|
B:GLY337
|
3.2
|
63.5
|
1.0
|
C
|
B:GLY337
|
3.9
|
61.4
|
1.0
|
O
|
0:HOH7936
|
3.9
|
0.5
|
1.0
|
O
|
B:GLY337
|
4.2
|
61.5
|
1.0
|
O
|
B:HOH8985
|
4.4
|
65.1
|
1.0
|
OP1
|
0:C2720
|
4.5
|
47.5
|
1.0
|
OE2
|
B:GLU333
|
4.7
|
55.2
|
1.0
|
OP2
|
0:U2721
|
4.7
|
47.0
|
1.0
|
O
|
B:HOH8970
|
4.9
|
63.6
|
1.0
|
CA
|
B:GLY337
|
4.9
|
59.1
|
1.0
|
CG2
|
U:THR17
|
4.9
|
63.9
|
1.0
|
|
Magnesium binding site 4 out
of 93 in 3cd6
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Magnesium Binding Sites List in 3cd6
Magnesium binding site 4 out
of 93 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Mg8054
b:44.6
occ:1.00
|
O
|
0:HOH7939
|
2.5
|
85.9
|
1.0
|
O
|
0:HOH6093
|
2.6
|
42.6
|
1.0
|
O
|
K:HOH2121
|
2.6
|
30.6
|
1.0
|
O
|
0:HOH4279
|
2.6
|
68.4
|
1.0
|
O
|
0:HOH3445
|
2.7
|
58.5
|
1.0
|
OD1
|
K:ASN42
|
2.9
|
36.3
|
1.0
|
O
|
0:HOH4731
|
3.3
|
62.0
|
1.0
|
CG
|
K:ASN42
|
4.0
|
36.5
|
1.0
|
O
|
0:HOH5590
|
4.4
|
62.8
|
1.0
|
O
|
0:HOH7811
|
4.4
|
44.5
|
1.0
|
OP1
|
0:U2546
|
4.5
|
34.9
|
1.0
|
CE
|
K:LYS41
|
4.6
|
48.9
|
1.0
|
OP1
|
0:U1749
|
4.6
|
34.5
|
1.0
|
OP1
|
0:A2583
|
4.6
|
38.0
|
1.0
|
OP1
|
0:U2545
|
4.6
|
41.4
|
1.0
|
ND2
|
K:ASN42
|
4.6
|
35.6
|
1.0
|
C5'
|
0:U2545
|
4.7
|
38.2
|
1.0
|
O
|
0:HOH5985
|
4.9
|
63.6
|
1.0
|
O
|
0:HOH7552
|
5.0
|
84.2
|
1.0
|
|
Magnesium binding site 5 out
of 93 in 3cd6
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Magnesium Binding Sites List in 3cd6
Magnesium binding site 5 out
of 93 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
T:Mg8057
b:76.5
occ:1.00
|
O
|
T:LEU112
|
2.7
|
80.3
|
1.0
|
O
|
T:SER114
|
2.7
|
99.6
|
1.0
|
O
|
T:HOH2868
|
2.8
|
61.1
|
1.0
|
OE1
|
T:GLN37
|
3.1
|
63.7
|
1.0
|
O
|
T:ASP117
|
3.1
|
0.9
|
1.0
|
O
|
T:TYR35
|
3.3
|
58.8
|
1.0
|
C
|
T:LEU112
|
3.4
|
80.0
|
1.0
|
O
|
T:ARG111
|
3.6
|
75.7
|
1.0
|
C
|
T:SER114
|
3.8
|
99.7
|
1.0
|
CD
|
T:GLN37
|
3.8
|
62.2
|
1.0
|
CG
|
T:GLN37
|
3.9
|
60.2
|
1.0
|
CA
|
T:LEU112
|
4.1
|
77.7
|
1.0
|
N
|
T:SER114
|
4.2
|
92.0
|
1.0
|
C
|
T:GLU113
|
4.2
|
88.7
|
1.0
|
N
|
T:GLU113
|
4.2
|
82.7
|
1.0
|
C
|
T:ASP117
|
4.2
|
0.5
|
1.0
|
O
|
T:GLU113
|
4.5
|
89.6
|
1.0
|
CA
|
T:GLU113
|
4.5
|
86.0
|
1.0
|
C
|
T:TYR35
|
4.5
|
58.5
|
1.0
|
C
|
T:ARG111
|
4.6
|
75.1
|
1.0
|
CA
|
T:SER118
|
4.6
|
0.7
|
1.0
|
CA
|
T:SER114
|
4.6
|
96.6
|
1.0
|
N
|
T:GLU115
|
4.7
|
0.1
|
1.0
|
N
|
T:LEU112
|
4.8
|
75.7
|
1.0
|
CA
|
T:GLU115
|
4.8
|
0.9
|
1.0
|
N
|
T:SER118
|
4.9
|
0.8
|
1.0
|
OG
|
T:SER114
|
4.9
|
97.7
|
1.0
|
|
Magnesium binding site 6 out
of 93 in 3cd6
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Magnesium Binding Sites List in 3cd6
Magnesium binding site 6 out
of 93 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Y:Mg8086
b:36.1
occ:1.00
|
O
|
Y:HIS133
|
2.5
|
31.5
|
1.0
|
O
|
Y:VAL139
|
2.6
|
33.4
|
1.0
|
O
|
Y:HOH8879
|
2.7
|
41.0
|
1.0
|
O
|
Y:HOH8859
|
2.7
|
35.2
|
1.0
|
O
|
Y:LYS136
|
2.8
|
34.6
|
1.0
|
O
|
0:HOH7932
|
3.0
|
53.6
|
1.0
|
O
|
Y:LYS137
|
3.4
|
33.3
|
1.0
|
CA
|
Y:LYS137
|
3.4
|
33.0
|
1.0
|
C
|
Y:LYS137
|
3.6
|
33.2
|
1.0
|
C
|
Y:VAL139
|
3.6
|
33.8
|
1.0
|
C
|
Y:LYS136
|
3.6
|
31.9
|
1.0
|
C
|
Y:HIS133
|
3.7
|
32.6
|
1.0
|
N
|
Y:LYS137
|
3.9
|
32.2
|
1.0
|
N
|
Y:VAL139
|
4.3
|
31.8
|
1.0
|
CA
|
Y:HIS133
|
4.4
|
32.7
|
1.0
|
N
|
Y:SER140
|
4.5
|
35.7
|
1.0
|
O
|
Y:HOH8836
|
4.5
|
36.2
|
1.0
|
CA
|
Y:VAL139
|
4.5
|
32.6
|
1.0
|
CA
|
Y:SER140
|
4.6
|
36.9
|
1.0
|
CB
|
Y:HIS133
|
4.6
|
33.5
|
1.0
|
N
|
Y:ARG138
|
4.6
|
33.9
|
1.0
|
CB
|
Y:LYS137
|
4.6
|
33.2
|
1.0
|
N
|
Y:HIS134
|
4.7
|
32.2
|
1.0
|
CA
|
Y:LYS136
|
4.9
|
30.5
|
1.0
|
CB
|
Y:VAL139
|
4.9
|
31.4
|
1.0
|
N
|
Y:LYS136
|
5.0
|
30.7
|
1.0
|
CD2
|
Y:HIS133
|
5.0
|
34.5
|
1.0
|
|
Magnesium binding site 7 out
of 93 in 3cd6
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Magnesium Binding Sites List in 3cd6
Magnesium binding site 7 out
of 93 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
0:Mg8002
b:33.1
occ:1.00
|
O6
|
0:G627
|
2.2
|
37.7
|
1.0
|
OP1
|
0:A2483
|
2.3
|
42.3
|
1.0
|
O
|
0:HOH7802
|
2.4
|
50.4
|
1.0
|
OP1
|
0:C2534
|
2.5
|
41.3
|
1.0
|
O
|
0:HOH4367
|
2.6
|
33.1
|
1.0
|
O
|
0:HOH7803
|
2.6
|
32.1
|
1.0
|
P
|
0:A2483
|
3.2
|
41.0
|
1.0
|
O
|
0:HOH7159
|
3.3
|
40.8
|
1.0
|
OP2
|
0:A2483
|
3.4
|
40.6
|
1.0
|
C6
|
0:G627
|
3.4
|
36.6
|
1.0
|
P
|
0:C2534
|
3.6
|
45.0
|
1.0
|
O4
|
0:U626
|
3.7
|
40.7
|
1.0
|
C5
|
0:U626
|
4.0
|
40.0
|
1.0
|
O5'
|
0:A2483
|
4.1
|
40.9
|
1.0
|
OP2
|
0:C2534
|
4.1
|
43.5
|
1.0
|
N1
|
0:G627
|
4.1
|
35.8
|
1.0
|
O2'
|
0:U625
|
4.2
|
31.0
|
1.0
|
C4
|
0:U626
|
4.2
|
39.6
|
1.0
|
O3'
|
0:C2533
|
4.2
|
41.3
|
1.0
|
O
|
0:HOH9274
|
4.3
|
37.8
|
1.0
|
O
|
0:HOH3554
|
4.4
|
48.6
|
1.0
|
O3'
|
0:G2482
|
4.5
|
42.2
|
1.0
|
C5
|
0:G627
|
4.5
|
35.6
|
1.0
|
O
|
0:HOH5919
|
4.6
|
70.5
|
1.0
|
O5'
|
0:C2534
|
4.9
|
42.0
|
1.0
|
OP2
|
0:U2535
|
4.9
|
45.4
|
1.0
|
O
|
0:HOH7529
|
4.9
|
50.8
|
1.0
|
OP2
|
0:C2533
|
4.9
|
42.2
|
1.0
|
N7
|
0:G627
|
5.0
|
35.3
|
1.0
|
|
Magnesium binding site 8 out
of 93 in 3cd6
Go back to
Magnesium Binding Sites List in 3cd6
Magnesium binding site 8 out
of 93 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
0:Mg8003
b:31.0
occ:1.00
|
OP1
|
0:A2624
|
2.1
|
27.1
|
1.0
|
OP2
|
0:G877
|
2.2
|
33.1
|
1.0
|
O
|
A:HOH8954
|
2.4
|
79.5
|
1.0
|
O
|
A:HOH8933
|
2.5
|
42.4
|
1.0
|
OP2
|
0:A876
|
2.5
|
33.8
|
1.0
|
O
|
0:HOH3694
|
2.6
|
29.2
|
1.0
|
P
|
0:G877
|
3.2
|
33.4
|
1.0
|
OP1
|
0:G877
|
3.2
|
35.4
|
1.0
|
P
|
0:A2624
|
3.4
|
29.9
|
1.0
|
OD1
|
A:ASN195
|
3.7
|
32.7
|
1.0
|
P
|
0:A876
|
3.9
|
33.9
|
1.0
|
O3'
|
0:G2623
|
4.0
|
30.1
|
1.0
|
OP2
|
0:A2624
|
4.1
|
31.6
|
1.0
|
O
|
0:HOH9027
|
4.1
|
21.6
|
1.0
|
O3'
|
0:A876
|
4.2
|
32.1
|
1.0
|
O
|
0:HOH6322
|
4.2
|
45.4
|
1.0
|
O
|
0:HOH7217
|
4.3
|
64.3
|
1.0
|
O5'
|
0:G877
|
4.3
|
30.1
|
1.0
|
O5'
|
0:A876
|
4.4
|
32.2
|
1.0
|
O
|
A:HOH8963
|
4.4
|
36.4
|
1.0
|
O3'
|
0:A875
|
4.5
|
30.1
|
1.0
|
O
|
A:HOH9042
|
4.6
|
31.4
|
1.0
|
O5'
|
0:A2624
|
4.6
|
31.5
|
1.0
|
O
|
A:ALA193
|
4.7
|
36.0
|
1.0
|
C5'
|
0:A876
|
4.7
|
32.3
|
1.0
|
CG
|
A:ASN195
|
4.7
|
30.2
|
1.0
|
O
|
A:HOH9035
|
4.8
|
45.7
|
1.0
|
C3'
|
0:A876
|
4.8
|
33.7
|
1.0
|
C5'
|
0:A2624
|
4.9
|
32.1
|
1.0
|
|
Magnesium binding site 9 out
of 93 in 3cd6
Go back to
Magnesium Binding Sites List in 3cd6
Magnesium binding site 9 out
of 93 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
0:Mg8004
b:24.5
occ:1.00
|
OP1
|
0:A459
|
2.2
|
25.7
|
1.0
|
O6
|
0:G456
|
2.3
|
39.6
|
1.0
|
O
|
0:HOH7809
|
2.3
|
34.9
|
1.0
|
O
|
0:HOH3815
|
2.3
|
25.2
|
1.0
|
O
|
0:HOH9799
|
2.4
|
26.6
|
1.0
|
O
|
0:HOH9054
|
2.4
|
32.2
|
1.0
|
C6
|
0:G456
|
3.4
|
41.5
|
1.0
|
P
|
0:A459
|
3.6
|
28.4
|
1.0
|
O
|
0:HOH6005
|
4.1
|
68.4
|
1.0
|
CE
|
C:LYS85
|
4.1
|
27.4
|
1.0
|
C5
|
0:G456
|
4.2
|
40.4
|
1.0
|
N7
|
0:G456
|
4.2
|
38.4
|
1.0
|
NZ
|
C:LYS85
|
4.2
|
28.9
|
1.0
|
C5'
|
0:A459
|
4.3
|
27.8
|
1.0
|
O
|
0:HOH3731
|
4.3
|
36.2
|
1.0
|
OP2
|
0:A455
|
4.3
|
28.9
|
1.0
|
O5'
|
0:A459
|
4.3
|
26.6
|
1.0
|
OP2
|
0:A459
|
4.3
|
33.1
|
1.0
|
O
|
0:HOH3540
|
4.4
|
40.0
|
1.0
|
N1
|
0:G456
|
4.5
|
42.4
|
1.0
|
N7
|
0:A455
|
4.5
|
36.2
|
1.0
|
CD
|
C:LYS85
|
4.5
|
27.9
|
1.0
|
O
|
0:HOH9348
|
4.5
|
31.7
|
1.0
|
OP1
|
0:A460
|
4.6
|
27.3
|
1.0
|
O3'
|
0:G458
|
4.6
|
27.0
|
1.0
|
OP1
|
0:A477
|
4.7
|
33.8
|
1.0
|
C5'
|
0:U454
|
4.8
|
31.1
|
1.0
|
OP2
|
0:A477
|
4.9
|
30.8
|
1.0
|
N6
|
0:A455
|
5.0
|
37.9
|
1.0
|
|
Magnesium binding site 10 out
of 93 in 3cd6
Go back to
Magnesium Binding Sites List in 3cd6
Magnesium binding site 10 out
of 93 in the Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Co-Cystal of Large Ribosomal Subunit Mutant G2616A with Cc-Puromycin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
0:Mg8005
b:28.9
occ:1.00
|
OP2
|
0:A1839
|
2.2
|
35.4
|
1.0
|
OP1
|
0:A1836
|
2.2
|
30.5
|
1.0
|
OP1
|
0:U1838
|
2.2
|
31.1
|
1.0
|
O
|
0:HOH3638
|
2.5
|
45.0
|
1.0
|
O
|
0:HOH7825
|
2.5
|
31.7
|
1.0
|
O
|
0:HOH7826
|
2.6
|
32.7
|
1.0
|
P
|
0:U1838
|
3.4
|
30.8
|
1.0
|
P
|
0:A1839
|
3.5
|
36.0
|
1.0
|
P
|
0:A1836
|
3.6
|
30.8
|
1.0
|
OP2
|
0:U1838
|
3.9
|
31.9
|
1.0
|
O
|
0:HOH5551
|
4.0
|
52.0
|
1.0
|
O5'
|
0:A1839
|
4.0
|
33.8
|
1.0
|
N7
|
0:A1839
|
4.1
|
31.4
|
1.0
|
C2'
|
0:U1835
|
4.1
|
33.6
|
1.0
|
O
|
0:HOH9530
|
4.1
|
47.4
|
1.0
|
O5'
|
0:U1838
|
4.2
|
30.2
|
1.0
|
C8
|
0:A1839
|
4.3
|
32.6
|
1.0
|
OP2
|
0:A1836
|
4.3
|
34.4
|
1.0
|
O3'
|
0:U1838
|
4.4
|
32.9
|
1.0
|
O3'
|
0:U1835
|
4.4
|
29.4
|
1.0
|
O2'
|
0:U1835
|
4.4
|
35.9
|
1.0
|
C3'
|
0:U1838
|
4.4
|
31.0
|
1.0
|
C3'
|
0:U1835
|
4.4
|
33.1
|
1.0
|
O5'
|
0:A1836
|
4.5
|
32.1
|
1.0
|
O3'
|
0:G1837
|
4.6
|
30.6
|
1.0
|
O
|
0:HOH5606
|
4.6
|
53.0
|
1.0
|
OP1
|
0:A1839
|
4.6
|
37.2
|
1.0
|
C3'
|
0:G1837
|
4.7
|
33.2
|
1.0
|
O
|
0:HOH9657
|
4.7
|
30.5
|
1.0
|
C5'
|
0:U1838
|
4.7
|
30.0
|
1.0
|
O
|
0:HOH7900
|
4.9
|
33.4
|
1.0
|
|
Reference:
G.Blaha,
G.Gurel,
S.J.Schroeder,
P.B.Moore,
T.A.Steitz.
Mutations Outside the Anisomycin-Binding Site Can Make Ribosomes Drug-Resistant. J.Mol.Biol. V. 379 505 2008.
ISSN: ISSN 0022-2836
PubMed: 18455733
DOI: 10.1016/J.JMB.2008.03.075
Page generated: Wed Aug 14 11:07:24 2024
|