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Magnesium in PDB 3ch5: The Crystal Structure of the Rangdp-NUP153ZNF2 Complex

Protein crystallography data

The structure of The Crystal Structure of the Rangdp-NUP153ZNF2 Complex, PDB code: 3ch5 was solved by I.R.Vetter, N.Schrader, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.76 / 2.10
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 69.700, 75.350, 123.050, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 23.4

Other elements in 3ch5:

The structure of The Crystal Structure of the Rangdp-NUP153ZNF2 Complex also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of the Rangdp-NUP153ZNF2 Complex (pdb code 3ch5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of the Rangdp-NUP153ZNF2 Complex, PDB code: 3ch5:

Magnesium binding site 1 out of 1 in 3ch5

Go back to Magnesium Binding Sites List in 3ch5
Magnesium binding site 1 out of 1 in the The Crystal Structure of the Rangdp-NUP153ZNF2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of the Rangdp-NUP153ZNF2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg221

b:22.7
occ:1.00
O A:HOH270 2.0 31.8 1.0
O1B A:GDP220 2.0 27.5 1.0
O A:HOH265 2.1 35.9 1.0
O A:HOH236 2.1 30.2 1.0
OG1 A:THR24 2.2 32.7 1.0
O A:HOH269 2.2 31.2 1.0
CB A:THR24 3.2 33.8 1.0
PB A:GDP220 3.3 28.7 1.0
O2B A:GDP220 3.5 29.4 1.0
N A:THR24 3.9 34.0 1.0
O2A A:GDP220 4.0 27.7 1.0
CA A:THR24 4.1 33.7 1.0
O A:THR66 4.2 32.1 1.0
OD2 A:ASP65 4.2 35.0 1.0
O3B A:GDP220 4.2 24.6 1.0
OD1 A:ASP65 4.3 37.2 1.0
CG2 A:THR24 4.3 34.6 1.0
OG1 A:THR66 4.3 32.7 1.0
O3A A:GDP220 4.4 29.2 1.0
OE2 A:GLU70 4.5 36.0 1.0
PA A:GDP220 4.5 27.5 1.0
O A:HOH283 4.6 41.4 1.0
CG A:ASP65 4.7 35.8 1.0
O1A A:GDP220 4.7 29.7 1.0
N A:GLY68 4.8 34.2 1.0
CB A:LYS23 4.9 31.6 1.0
O A:HOH228 4.9 30.3 1.0
C A:LYS23 4.9 33.4 1.0
C A:THR66 5.0 32.7 1.0

Reference:

N.Schrader, C.Koerner, K.Koessmeier, J.A.Bangert, A.Wittinghofer, R.Stoll, I.R.Vetter. The Crystal Structure of the Ran-NUP153ZNF2 Complex: A General Ran Docking Site at the Nuclear Pore Complex Structure V. 16 1116 2008.
ISSN: ISSN 0969-2126
PubMed: 18611384
DOI: 10.1016/J.STR.2008.03.014
Page generated: Mon Dec 14 08:00:50 2020

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