Magnesium in PDB 3cis: The Crystal Structure of RV2623 From Mycobacterium Tuberculosis

The structure of The Crystal Structure of RV2623 From Mycobacterium Tuberculosis, PDB code: 3cis was solved by P.Bilder, J.Drumm, K.Mi, J.Chan, S.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.57 / 2.90
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	172.975, 241.480, 241.659, 90.00, 90.00, 90.00
R / Rfree (%)	25 / 26.8

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>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the The Crystal Structure of RV2623 From Mycobacterium Tuberculosis (pdb code 3cis). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the The Crystal Structure of RV2623 From Mycobacterium Tuberculosis, PDB code: 3cis:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in the The Crystal Structure of RV2623 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of RV2623 From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:24.2 occ:1.00 O1G A:ATP1101 2.1 25.2 1.0 O2A A:ATP1101 2.2 24.0 1.0 O A:HOH1118 2.2 39.1 1.0 O2B A:ATP1101 2.3 24.4 1.0 O A:HOH1119 2.8 41.5 1.0 PG A:ATP1101 3.5 24.9 1.0 PB A:ATP1101 3.5 24.3 1.0 PA A:ATP1101 3.6 23.5 1.0 O3B A:ATP1101 3.8 24.7 1.0 O3A A:ATP1101 4.0 23.8 1.0 N7 A:ATP1101 4.1 20.9 1.0 O2G A:ATP1101 4.1 24.9 1.0 C8 A:ATP1101 4.3 20.8 1.0 OD1 A:ASP15 4.3 29.4 1.0 O5' A:ATP1101 4.4 23.4 1.0 OG A:SER121 4.4 33.0 1.0 N A:GLY122 4.5 34.1 1.0 O3G A:ATP1101 4.6 25.1 1.0 N A:SER121 4.7 32.8 1.0 O1A A:ATP1101 4.7 23.8 1.0 O1B A:ATP1101 4.8 24.0 1.0 CG2 A:VAL132 4.9 29.2 1.0 CA A:GLY122 5.0 34.9 1.0

Magnesium binding site 2 out of 16 in the The Crystal Structure of RV2623 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of RV2623 From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:32.0 occ:1.00 O1G A:ATP1102 2.2 32.1 1.0 O2A A:ATP1102 2.4 33.9 1.0 O2B A:ATP1102 2.5 32.7 1.0 OD2 A:ASP198 3.3 38.8 1.0 PG A:ATP1102 3.6 32.3 1.0 O A:HOH1157 3.6 29.4 1.0 CG A:ASP198 3.6 39.2 1.0 O A:HOH1135 3.6 46.3 1.0 PB A:ATP1102 3.7 32.4 1.0 PA A:ATP1102 3.8 33.4 1.0 N7 A:ATP1102 3.9 37.5 1.0 CB A:ASP198 4.0 40.0 1.0 O3B A:ATP1102 4.1 32.2 1.0 C8 A:ATP1102 4.2 37.2 1.0 O2G A:ATP1102 4.2 32.7 1.0 O3A A:ATP1102 4.2 32.9 1.0 N A:GLY267 4.2 37.5 1.0 OD1 A:ASP198 4.3 38.8 1.0 CA A:GLY267 4.5 38.1 1.0 O5' A:ATP1102 4.6 33.9 1.0 CG2 A:VAL277 4.6 36.8 1.0 OD2 A:ASP167 4.7 36.6 1.0 O3G A:ATP1102 4.7 32.2 1.0 O1A A:ATP1102 4.8 33.5 1.0 N A:ARG266 4.9 37.1 1.0 O1B A:ATP1102 5.0 32.1 1.0

Magnesium binding site 3 out of 16 in the The Crystal Structure of RV2623 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Crystal Structure of RV2623 From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2001 b:41.2 occ:1.00 O2B B:ATP2101 2.2 44.8 1.0 O1G B:ATP2101 2.4 45.0 1.0 O B:HOH2110 2.5 40.1 1.0 O2A B:ATP2101 2.6 44.8 1.0 PB B:ATP2101 3.5 44.7 1.0 PG B:ATP2101 3.6 45.1 1.0 OG B:SER121 3.8 63.7 1.0 PA B:ATP2101 3.9 44.8 1.0 N B:GLY122 3.9 65.3 1.0 O2G B:ATP2101 4.0 45.2 1.0 O3B B:ATP2101 4.0 44.9 1.0 O3A B:ATP2101 4.2 44.8 1.0 N B:SER121 4.2 61.8 1.0 OD1 B:ASP15 4.3 55.4 1.0 CA B:GLY122 4.5 66.3 1.0 N7 B:ATP2101 4.5 46.6 1.0 O5' B:ATP2101 4.5 45.0 1.0 C8 B:ATP2101 4.6 46.5 1.0 O1B B:ATP2101 4.8 44.6 1.0 C B:SER121 4.8 64.3 1.0 CA B:SER121 4.9 63.3 1.0 CA B:GLY120 4.9 58.8 1.0 CB B:SER121 4.9 63.4 1.0 O3G B:ATP2101 4.9 44.9 1.0 C B:GLY120 4.9 60.3 1.0

Magnesium binding site 4 out of 16 in the The Crystal Structure of RV2623 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Crystal Structure of RV2623 From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2002 b:40.4 occ:1.00 O2A B:ATP2102 2.1 36.8 1.0 O1G B:ATP2102 2.1 36.1 1.0 O2B B:ATP2102 2.8 36.2 1.0 O B:HOH2130 3.0 44.8 1.0 N7 B:ATP2102 3.6 40.3 1.0 PA B:ATP2102 3.6 36.6 1.0 CG B:ASP198 3.6 38.2 1.0 OD2 B:ASP198 3.6 38.0 1.0 PG B:ATP2102 3.7 35.9 1.0 C8 B:ATP2102 3.8 40.1 1.0 OD1 B:ASP198 3.9 37.7 1.0 CG2 B:VAL277 3.9 34.8 1.0 PB B:ATP2102 3.9 36.2 1.0 CB B:ASP198 4.1 38.7 1.0 O3B B:ATP2102 4.2 36.1 1.0 O3A B:ATP2102 4.3 36.2 1.0 O B:HOH2131 4.4 42.3 1.0 O5' B:ATP2102 4.4 37.2 1.0 O3G B:ATP2102 4.5 35.8 1.0 O1A B:ATP2102 4.5 36.5 1.0 N B:GLY267 4.6 38.1 1.0 O2G B:ATP2102 4.6 35.8 1.0 OD2 B:ASP167 4.8 47.8 1.0 C5 B:ATP2102 4.8 40.3 1.0 CB B:VAL277 4.9 34.8 1.0 CA B:GLY267 5.0 37.9 1.0

Magnesium binding site 5 out of 16 in the The Crystal Structure of RV2623 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Crystal Structure of RV2623 From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1001 b:24.3 occ:1.00 O2B C:ATP1101 2.1 25.4 1.0 O1G C:ATP1101 2.2 24.8 1.0 O2A C:ATP1101 2.3 25.4 1.0 O C:HOH1131 2.3 26.3 1.0 PB C:ATP1101 3.3 25.4 1.0 PG C:ATP1101 3.4 24.7 1.0 PA C:ATP1101 3.6 25.4 1.0 O3B C:ATP1101 3.8 25.1 1.0 O2G C:ATP1101 3.9 24.8 1.0 O3A C:ATP1101 3.9 25.2 1.0 N C:GLY122 4.2 34.2 1.0 OG C:SER121 4.2 33.0 1.0 N7 C:ATP1101 4.3 23.6 1.0 OD1 C:ASP15 4.3 29.4 1.0 O5' C:ATP1101 4.4 25.2 1.0 C8 C:ATP1101 4.5 23.5 1.0 N C:SER121 4.5 32.8 1.0 O1B C:ATP1101 4.6 25.2 1.0 CA C:GLY122 4.7 34.9 1.0 O3G C:ATP1101 4.7 24.8 1.0 O1A C:ATP1101 4.8 25.4 1.0 CA C:GLY120 4.9 32.2 1.0

Magnesium binding site 6 out of 16 in the The Crystal Structure of RV2623 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Crystal Structure of RV2623 From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1002 b:31.7 occ:1.00 O2A C:ATP1102 2.1 33.2 1.0 O C:HOH1155 2.2 29.5 1.0 O2B C:ATP1102 2.2 32.9 1.0 O1G C:ATP1102 2.2 32.7 1.0 PB C:ATP1102 3.5 32.6 1.0 OD2 C:ASP198 3.5 38.8 1.0 PA C:ATP1102 3.5 32.8 1.0 PG C:ATP1102 3.7 32.9 1.0 CG C:ASP198 3.9 39.2 1.0 N7 C:ATP1102 3.9 34.7 1.0 O3A C:ATP1102 4.0 32.7 1.0 C8 C:ATP1102 4.0 34.5 1.0 O3B C:ATP1102 4.1 32.6 1.0 N C:GLY267 4.1 37.4 1.0 O5' C:ATP1102 4.3 32.9 1.0 O2G C:ATP1102 4.3 33.1 1.0 CB C:ASP198 4.3 40.0 1.0 OD2 C:ASP167 4.4 36.6 1.0 OD1 C:ASP198 4.4 38.7 1.0 CA C:GLY267 4.5 38.1 1.0 N C:ARG266 4.6 37.2 1.0 O1A C:ATP1102 4.6 32.5 1.0 CG2 C:VAL277 4.7 36.7 1.0 CA C:GLY265 4.7 37.6 1.0 O1B C:ATP1102 4.7 32.5 1.0 O3G C:ATP1102 4.8 32.8 1.0 CG C:ARG266 4.9 34.0 1.0

Magnesium binding site 7 out of 16 in the The Crystal Structure of RV2623 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Crystal Structure of RV2623 From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg2001 b:32.8 occ:1.00 O1G D:ATP2101 2.2 41.8 1.0 O D:HOH2112 2.2 33.9 1.0 O2B D:ATP2101 2.4 41.9 1.0 O2A D:ATP2101 2.4 41.4 1.0 PG D:ATP2101 3.5 41.9 1.0 PB D:ATP2101 3.6 41.6 1.0 PA D:ATP2101 3.8 41.2 1.0 O3B D:ATP2101 3.9 41.8 1.0 O2G D:ATP2101 3.9 42.0 1.0 OG D:SER121 4.1 63.7 1.0 O3A D:ATP2101 4.1 41.4 1.0 N D:GLY122 4.2 65.2 1.0 O5' D:ATP2101 4.4 41.5 1.0 OD1 D:ASP15 4.4 55.4 1.0 N7 D:ATP2101 4.4 43.6 1.0 N D:SER121 4.5 61.8 1.0 C8 D:ATP2101 4.6 43.4 1.0 O3G D:ATP2101 4.8 41.8 1.0 CA D:GLY122 4.8 66.3 1.0 O1B D:ATP2101 4.9 41.6 1.0 CG2 D:VAL132 4.9 42.0 1.0 O1A D:ATP2101 5.0 41.3 1.0

Magnesium binding site 8 out of 16 in the The Crystal Structure of RV2623 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Crystal Structure of RV2623 From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg2002 b:36.0 occ:1.00 O2B D:ATP2102 2.3 33.4 1.0 O2A D:ATP2102 2.3 34.7 1.0 O1G D:ATP2102 2.4 32.2 1.0 OD2 D:ASP198 3.4 38.0 1.0 N7 D:ATP2102 3.5 37.0 1.0 PB D:ATP2102 3.6 33.4 1.0 CG D:ASP198 3.6 38.2 1.0 PA D:ATP2102 3.6 34.4 1.0 C8 D:ATP2102 3.7 36.8 1.0 PG D:ATP2102 3.8 32.2 1.0 OD1 D:ASP198 3.9 37.7 1.0 N D:GLY267 4.0 38.1 1.0 O3A D:ATP2102 4.1 33.7 1.0 O3B D:ATP2102 4.1 32.9 1.0 O5' D:ATP2102 4.2 34.9 1.0 CB D:ASP198 4.3 38.7 1.0 OD2 D:ASP167 4.3 47.7 1.0 N D:ARG266 4.4 38.8 1.0 CG2 D:VAL277 4.4 34.8 1.0 CA D:GLY267 4.5 37.9 1.0 O2G D:ATP2102 4.6 32.1 1.0 CA D:GLY265 4.7 39.0 1.0 C5 D:ATP2102 4.7 37.2 1.0 O1A D:ATP2102 4.8 34.3 1.0 O1B D:ATP2102 4.8 33.0 1.0 C D:GLY265 4.9 38.9 1.0 O3G D:ATP2102 4.9 32.3 1.0 CB D:ARG266 5.0 38.5 1.0

Magnesium binding site 9 out of 16 in the The Crystal Structure of RV2623 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of The Crystal Structure of RV2623 From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1001 b:21.5 occ:1.00 O2A E:ATP1101 2.2 22.5 1.0 O2B E:ATP1101 2.2 21.5 1.0 O1G E:ATP1101 2.3 22.0 1.0 PB E:ATP1101 3.5 21.6 1.0 PA E:ATP1101 3.5 22.0 1.0 PG E:ATP1101 3.7 22.0 1.0 O3A E:ATP1101 3.9 21.7 1.0 N7 E:ATP1101 4.0 21.1 1.0 O3B E:ATP1101 4.0 21.9 1.0 O5' E:ATP1101 4.1 21.6 1.0 OD1 E:ASP15 4.1 29.3 1.0 C8 E:ATP1101 4.1 20.9 1.0 OG E:SER121 4.3 33.0 1.0 O2G E:ATP1101 4.4 21.9 1.0 N E:GLY122 4.5 34.1 1.0 N E:SER121 4.6 32.8 1.0 O1A E:ATP1101 4.7 22.1 1.0 O1B E:ATP1101 4.8 21.3 1.0 O3G E:ATP1101 4.8 21.9 1.0 CG2 E:VAL132 4.8 29.2 1.0 CA E:GLY120 4.9 32.2 1.0 O E:HOH1125 5.0 31.8 1.0

Magnesium binding site 10 out of 16 in the The Crystal Structure of RV2623 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of The Crystal Structure of RV2623 From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1002 b:23.3 occ:1.00 O2B E:ATP1102 2.0 27.2 1.0 O1G E:ATP1102 2.1 25.9 1.0 O2A E:ATP1102 2.2 28.4 1.0 PB E:ATP1102 3.3 27.0 1.0 O E:HOH1108 3.4 21.9 1.0 PG E:ATP1102 3.5 26.2 1.0 OD2 E:ASP198 3.5 38.8 1.0 PA E:ATP1102 3.5 28.0 1.0 O3B E:ATP1102 3.8 26.5 1.0 O3A E:ATP1102 3.8 27.7 1.0 CG E:ASP198 3.9 39.2 1.0 N E:GLY267 4.0 37.4 1.0 N7 E:ATP1102 4.1 34.1 1.0 O2G E:ATP1102 4.2 26.2 1.0 C8 E:ATP1102 4.2 33.7 1.0 CA E:GLY267 4.3 38.1 1.0 O5' E:ATP1102 4.3 28.5 1.0 CB E:ASP198 4.3 40.0 1.0 OD1 E:ASP198 4.5 38.8 1.0 OD2 E:ASP167 4.5 36.6 1.0 O1B E:ATP1102 4.6 26.7 1.0 N E:ARG266 4.6 37.2 1.0 O3G E:ATP1102 4.6 26.2 1.0 O1A E:ATP1102 4.7 28.0 1.0 CA E:GLY265 4.7 37.6 1.0 CG2 E:VAL277 4.8 36.8 1.0 CG E:ARG266 4.9 34.0 1.0

J.Drumm, K.Mi, P.Bilder, S.Almo, J.Chan. The Crystal Structure of RV2623 : A Novel, Tandem-Repeat Universal Stress Protein of Mycobacterium Tuberculosis To Be Published.