Magnesium in PDB 3cwz: Structure of RAB6(Gtp)-R6IP1 Complex

The structure of Structure of RAB6(Gtp)-R6IP1 Complex, PDB code: 3cwz was solved by R.Recacha, A.Houdusse, B.Goud, A.R.Khan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.97 / 3.20
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	100.240, 100.240, 299.250, 90.00, 90.00, 120.00
R / Rfree (%)	24.6 / 30.2

The binding sites of Magnesium atom in the Structure of RAB6(Gtp)-R6IP1 Complex (pdb code 3cwz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of RAB6(Gtp)-R6IP1 Complex, PDB code: 3cwz:

Magnesium binding site 1 out of 1 in the Structure of RAB6(Gtp)-R6IP1 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of RAB6(Gtp)-R6IP1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:0.5 occ:1.00 OG1 A:THR27 2.3 0.9 1.0 OG1 A:THR45 2.5 79.3 1.0 O2B A:GTP4200 2.6 0.2 1.0 OD1 A:ASP68 3.0 90.2 1.0 OD2 A:ASP68 3.0 91.4 1.0 O A:THR69 3.1 83.6 1.0 CG A:ASP68 3.2 90.0 1.0 O1G A:GTP4200 3.3 0.6 1.0 CB A:THR45 3.3 81.5 1.0 CG2 A:THR45 3.5 80.1 1.0 N A:THR27 3.5 0.5 1.0 CB A:THR27 3.6 0.6 1.0 CB A:LYS26 3.6 0.9 1.0 CE A:LYS26 3.7 0.5 1.0 PB A:GTP4200 3.8 0.6 1.0 O3G A:GTP4200 3.9 0.8 1.0 CA A:THR27 4.0 0.2 1.0 PG A:GTP4200 4.0 0.4 1.0 O1B A:GTP4200 4.1 0.0 1.0 C A:THR69 4.2 85.1 1.0 C A:LYS26 4.2 0.1 1.0 O3B A:GTP4200 4.3 0.7 1.0 CG2 A:THR27 4.5 0.2 1.0 CA A:LYS26 4.5 1.0 1.0 CD A:LYS26 4.5 0.9 1.0 NZ A:LYS26 4.5 0.8 1.0 CB A:ASP68 4.5 88.6 1.0 CG A:LYS26 4.6 0.2 1.0 C A:ASP68 4.6 87.0 1.0 CA A:THR45 4.7 82.1 1.0 N A:THR69 4.8 86.9 1.0 O A:ASP68 4.8 86.0 1.0 CA A:ALA70 4.9 87.2 1.0 CA A:ASP68 5.0 86.7 1.0 N A:LYS26 5.0 0.9 1.0

R.Recacha, A.Boulet, F.Jollivet, S.Monier, A.Houdusse, B.Goud, A.R.Khan. Structural Basis For Recruitment of RAB6-Interacting Protein 1 to Golgi Via A Run Domain. Structure V. 17 21 2009.
ISSN: ISSN 0969-2126
PubMed: 19141279
DOI: 10.1016/J.STR.2008.10.014