Magnesium in PDB 3cyz: Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with 9-Keto-2(E)-Decenoic Acid at pH 7.0

The structure of Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with 9-Keto-2(E)-Decenoic Acid at pH 7.0, PDB code: 3cyz was solved by M.E.Pesenti, S.Spinelli, V.Bezirard, L.Briand, J.C.Pernollet, M.Tegoni, C.Cambillau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	36.285, 75.555, 84.113, 90.00, 90.00, 90.00
R / Rfree (%)	16.2 / 20

The structure of Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with 9-Keto-2(E)-Decenoic Acid at pH 7.0 also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Magnesium atom in the Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with 9-Keto-2(E)-Decenoic Acid at pH 7.0 (pdb code 3cyz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with 9-Keto-2(E)-Decenoic Acid at pH 7.0, PDB code: 3cyz:

Magnesium binding site 1 out of 1 in the Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with 9-Keto-2(E)-Decenoic Acid at pH 7.0


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with 9-Keto-2(E)-Decenoic Acid at pH 7.0 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg123 b:20.7 occ:1.00 O A:HOH280 2.0 18.4 1.0 O B:HOH244 2.1 18.6 1.0 O A:HOH278 2.1 19.5 1.0 O A:HOH277 2.1 16.7 1.0 O A:HOH279 2.2 20.4 1.0 O B:HOH243 2.2 18.0 1.0 O A:HOH135 3.9 20.1 1.0 OE2 A:GLU54 4.0 19.4 1.0 O B:HOH174 4.1 19.7 1.0 O B:HOH151 4.2 20.0 1.0 O B:HOH155 4.3 24.3 1.0 O B:HOH224 4.3 37.7 1.0 O B:HOH136 4.3 19.1 1.0 O A:HOH152 4.3 16.8 1.0 CA B:GLY72 4.3 20.4 1.0 O A:HOH142 4.4 21.9 1.0 O A:HOH231 4.4 33.1 1.0 O A:HOH147 4.4 27.4 1.0 O B:GLY72 4.4 19.4 1.0 CG A:GLU54 4.5 18.2 1.0 CD A:GLU54 4.7 18.7 1.0 O A:GLU54 4.7 16.3 1.0 C B:GLY72 4.9 20.0 1.0 O B:HOH127 5.0 18.6 1.0

M.E.Pesenti, S.Spinelli, V.Bezirard, L.Briand, J.C.Pernollet, V.Campanacci, M.Tegoni, C.Cambillau. Queen Bee Pheromone Binding Protein pH-Induced Domain Swapping Favors Pheromone Release J.Mol.Biol. V. 390 981 2009.
ISSN: ISSN 0022-2836
PubMed: 19481550
DOI: 10.1016/J.JMB.2009.05.067