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Magnesium in PDB 3d2j: Structure of Berberine Bridge Enzyme From Eschscholzia Californica, Tetragonal Crystal Form

Enzymatic activity of Structure of Berberine Bridge Enzyme From Eschscholzia Californica, Tetragonal Crystal Form

All present enzymatic activity of Structure of Berberine Bridge Enzyme From Eschscholzia Californica, Tetragonal Crystal Form:
1.21.3.3;

Protein crystallography data

The structure of Structure of Berberine Bridge Enzyme From Eschscholzia Californica, Tetragonal Crystal Form, PDB code: 3d2j was solved by A.Winkler, A.Lyskowski, P.Macheroux, K.Gruber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.05
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.520, 68.520, 246.278, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 22.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Berberine Bridge Enzyme From Eschscholzia Californica, Tetragonal Crystal Form (pdb code 3d2j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Berberine Bridge Enzyme From Eschscholzia Californica, Tetragonal Crystal Form, PDB code: 3d2j:

Magnesium binding site 1 out of 1 in 3d2j

Go back to Magnesium Binding Sites List in 3d2j
Magnesium binding site 1 out of 1 in the Structure of Berberine Bridge Enzyme From Eschscholzia Californica, Tetragonal Crystal Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Berberine Bridge Enzyme From Eschscholzia Californica, Tetragonal Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg900

b:62.3
occ:1.00
 O A:HOH1425 2.2 63.3 1.0
O A:HOH1426 2.5 62.7 1.0
OD1 A:ASP45 2.5 58.8 1.0
O A:HOH1265 2.9 42.5 1.0
OD2 A:ASP45 3.1 44.7 1.0
CG A:ASP45 3.1 47.2 1.0
OD2 A:ASP47 3.2 83.9 1.0
O A:HOH1301 3.4 43.1 1.0
CB A:ASP47 3.7 74.9 1.0
CG A:ASP47 3.9 82.8 1.0
N A:ASP47 4.3 53.8 1.0
CA A:ASP47 4.5 61.6 1.0
CB A:ASP45 4.6 46.4 1.0
O A:HOH1372 4.7 51.9 1.0
C A:ASP47 4.9 45.6 1.0

Reference:

A.Winkler, A.Lyskowski, S.Riedl, M.Puhl, T.M.Kutchan, P.Macheroux, K.Gruber. A Concerted Mechanism For Berberine Bridge Enzyme Nat.Chem.Biol. V. 4 739 2008.
ISSN: ISSN 1552-4450
PubMed: 18953357
DOI: 10.1038/NCHEMBIO.123
Page generated: Wed Aug 14 12:20:00 2024

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