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Magnesium in PDB 3d46: Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate
Protein crystallography data
The structure of Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate, PDB code: 3d46
was solved by
A.A.Fedorov,
E.V.Fedorov,
J.M.Sauder,
S.K.Burley,
J.A.Gerlt,
S.C.Almo,
Newyork Sgx Research Center For Structural Genomics (Nysgxrc),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 24.97 / 1.90 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 119.524, 147.717, 195.825, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 18.9 / 20.1 |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate
(pdb code 3d46). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate, PDB code: 3d46:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Magnesium where determined in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate, PDB code: 3d46:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Magnesium binding site 1 out of 8 in 3d46
Go back to
Magnesium Binding Sites List in 3d46
Magnesium binding site 1 out
of 8 in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate within 5.0Å range:
|
Magnesium binding site 2 out of 8 in 3d46
Go back to
Magnesium Binding Sites List in 3d46
Magnesium binding site 2 out
of 8 in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate within 5.0Å range:
|
Magnesium binding site 3 out of 8 in 3d46
Go back to
Magnesium Binding Sites List in 3d46
Magnesium binding site 3 out
of 8 in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate within 5.0Å range:
|
Magnesium binding site 4 out of 8 in 3d46
Go back to
Magnesium Binding Sites List in 3d46
Magnesium binding site 4 out
of 8 in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate within 5.0Å range:
|
Magnesium binding site 5 out of 8 in 3d46
Go back to
Magnesium Binding Sites List in 3d46
Magnesium binding site 5 out
of 8 in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate within 5.0Å range:
|
Magnesium binding site 6 out of 8 in 3d46
Go back to
Magnesium Binding Sites List in 3d46
Magnesium binding site 6 out
of 8 in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate within 5.0Å range:
|
Magnesium binding site 7 out of 8 in 3d46
Go back to
Magnesium Binding Sites List in 3d46
Magnesium binding site 7 out
of 8 in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate within 5.0Å range:
|
Magnesium binding site 8 out of 8 in 3d46
Go back to
Magnesium Binding Sites List in 3d46
Magnesium binding site 8 out
of 8 in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate within 5.0Å range:
|
Reference:
A.A.Fedorov,
E.V.Fedorov,
J.M.Sauder,
S.K.Burley,
J.A.Gerlt,
S.C.Almo.
Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium Complexed with Mg and L-Tartrate. To Be Published.
Page generated: Sun Aug 10 20:01:25 2025
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