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Magnesium in PDB 3d6t: Structure of the Roc Domain From the Parkinson'S Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase

Enzymatic activity of Structure of the Roc Domain From the Parkinson'S Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase

All present enzymatic activity of Structure of the Roc Domain From the Parkinson'S Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase:
2.7.11.1;

Protein crystallography data

The structure of Structure of the Roc Domain From the Parkinson'S Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase, PDB code: 3d6t was solved by J.Deng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.09 / 2.43
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 69.919, 53.167, 42.736, 90.00, 112.76, 90.00
R / Rfree (%) 21.1 / 30.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Roc Domain From the Parkinson'S Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase (pdb code 3d6t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Roc Domain From the Parkinson'S Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase, PDB code: 3d6t:

Magnesium binding site 1 out of 1 in 3d6t

Go back to Magnesium Binding Sites List in 3d6t
Magnesium binding site 1 out of 1 in the Structure of the Roc Domain From the Parkinson'S Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Roc Domain From the Parkinson'S Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2

b:41.8
occ:1.00
O2B B:GDP1 2.2 36.7 1.0
O1B B:GDP1 3.3 32.1 1.0
PB B:GDP1 3.3 29.5 1.0
O2A B:GDP1 3.9 33.4 1.0
O3A B:GDP1 4.4 33.5 1.0
O3B B:GDP1 4.4 28.2 1.0
PA B:GDP1 4.7 30.6 1.0

Reference:

J.Deng, P.A.Lewis, E.Greggio, E.Sluch, A.Beilina, M.R.Cookson. Structure of the Roc Domain From the Parkinson'S Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Proc.Natl.Acad.Sci.Usa V. 105 1499 2008.
ISSN: ISSN 0027-8424
PubMed: 18230735
DOI: 10.1073/PNAS.0709098105
Page generated: Wed Aug 14 12:24:11 2024

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