Magnesium in PDB 3d6w: Lyttr Dna-Binding Domain of Putative Methyl-Accepting/Dna Response Regulator From Bacillus Cereus.

The structure of Lyttr Dna-Binding Domain of Putative Methyl-Accepting/Dna Response Regulator From Bacillus Cereus., PDB code: 3d6w was solved by J.Osipiuk, E.Evdokimova, M.Kudritska, A.Savchenko, A.M.Edwards, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.00 / 2.40
Space group	P 42 2 2
Cell size a, b, c (Å), α, β, γ (°)	88.784, 88.784, 74.425, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 20.9

The binding sites of Magnesium atom in the Lyttr Dna-Binding Domain of Putative Methyl-Accepting/Dna Response Regulator From Bacillus Cereus. (pdb code 3d6w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Lyttr Dna-Binding Domain of Putative Methyl-Accepting/Dna Response Regulator From Bacillus Cereus., PDB code: 3d6w:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Lyttr Dna-Binding Domain of Putative Methyl-Accepting/Dna Response Regulator From Bacillus Cereus.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lyttr Dna-Binding Domain of Putative Methyl-Accepting/Dna Response Regulator From Bacillus Cereus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:62.7 occ:1.00 O A:HOH46 2.5 57.1 1.0 O A:HOH40 2.5 47.6 1.0 O A:ILE177 2.6 59.4 1.0 O A:HOH3 2.7 50.1 1.0 O A:ASN175 3.5 56.8 1.0 C A:ILE177 3.6 58.6 1.0 OD2 A:ASP193 3.7 50.1 1.0 O A:HOH57 3.8 59.9 1.0 OD1 A:ASP193 3.8 48.8 1.0 C A:ASN175 4.2 56.6 1.0 CG A:ASP193 4.2 47.4 1.0 N A:ILE177 4.3 56.8 1.0 CA A:LYS178 4.4 61.4 1.0 N A:LYS178 4.4 59.7 1.0 C A:HIS176 4.5 56.4 1.0 CA A:ILE177 4.6 57.0 1.0 O A:VAL174 4.7 58.2 1.0 CA A:HIS176 4.7 56.7 1.0 N A:HIS176 4.8 57.3 1.0 CA A:ASN175 4.9 56.2 1.0 O A:HIS176 4.9 57.2 1.0

Magnesium binding site 2 out of 2 in the Lyttr Dna-Binding Domain of Putative Methyl-Accepting/Dna Response Regulator From Bacillus Cereus.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lyttr Dna-Binding Domain of Putative Methyl-Accepting/Dna Response Regulator From Bacillus Cereus. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:76.6 occ:1.00 O B:HOH73 2.3 68.0 1.0 O B:HOH23 2.5 62.7 1.0 O B:ILE177 2.5 57.9 1.0 O B:HOH72 2.6 58.6 1.0 C B:ILE177 3.5 57.6 1.0 OD1 B:ASP193 3.7 51.2 1.0 O B:ASN175 4.0 58.0 1.0 CA B:LYS178 4.0 59.1 1.0 OD2 B:ASP193 4.0 51.6 1.0 N B:LYS178 4.1 58.3 1.0 CG B:ASP193 4.2 50.6 1.0 N B:ILE177 4.4 56.9 1.0 C B:ASN175 4.5 57.9 1.0 CA B:ILE177 4.6 56.6 1.0 O B:LYS178 4.6 59.1 1.0 C B:HIS176 4.6 57.6 1.0 C B:LYS178 4.7 59.1 1.0 CA B:HIS176 4.9 57.5 1.0 O B:VAL174 4.9 58.7 1.0 N B:HIS176 5.0 57.8 1.0

J.Osipiuk, E.Evdokimova, M.Kudritska, A.Savchenko, A.M.Edwards, A.Joachimiak. X-Ray Crystal Structure of Lyttr Dna-Binding Domain of Putative Methyl-Accepting/Dna Response Regulator From Bacillus Cereus. To Be Published.