Magnesium in PDB 3da3: Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli

The structure of Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli, PDB code: 3da3 was solved by K.Zeth, R.Albrecht, C.Romer, V.Braun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.98 / 2.50
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	119.880, 119.880, 96.220, 90.00, 90.00, 90.00
R / Rfree (%)	23.5 / 29.5

The binding sites of Magnesium atom in the Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli (pdb code 3da3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli, PDB code: 3da3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg279 b:14.8 occ:1.00 MG B:MG279 3.0 15.9 1.0 ND2 A:ASN49 3.0 14.8 1.0 OG A:SER47 3.0 17.3 1.0 CG B:PRO28 3.6 24.0 1.0 CB A:ASN49 3.6 15.5 1.0 CA B:PHE44 3.7 17.4 1.0 CD B:PRO28 3.7 23.8 1.0 CB A:SER47 3.7 16.6 1.0 CG A:ASN49 3.7 14.7 1.0 CD1 B:PHE44 3.8 15.8 1.0 CB B:PHE44 4.1 16.9 1.0 CB B:SER47 4.1 16.5 1.0 N B:PHE44 4.1 18.3 1.0 O B:SER43 4.3 19.0 1.0 CD1 A:PHE44 4.4 15.4 1.0 OG B:SER47 4.4 16.0 1.0 CG B:PHE44 4.4 17.1 1.0 C B:SER43 4.5 19.0 1.0 O B:HOH288 4.6 15.6 1.0 CE1 A:PHE44 4.7 15.6 1.0 C B:PHE44 4.8 16.9 1.0 CE1 B:PHE44 4.8 15.7 1.0 O B:PHE44 4.8 16.9 1.0 CA A:ASN49 4.9 15.6 1.0 CB B:PRO28 4.9 24.2 1.0 OD1 A:ASN49 4.9 13.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg279 b:15.9 occ:1.00 OG B:SER47 2.7 16.0 1.0 MG A:MG279 3.0 14.8 1.0 ND2 B:ASN49 3.3 13.9 1.0 CB B:SER47 3.3 16.5 1.0 CB B:ASN49 3.5 15.1 1.0 CA A:PHE44 3.8 17.4 1.0 CG A:PRO28 3.8 22.7 1.0 CG B:ASN49 3.9 14.5 1.0 CD A:PRO28 3.9 22.9 1.0 CD1 A:PHE44 4.0 15.4 1.0 CB A:PHE44 4.1 17.3 1.0 CB A:SER47 4.1 16.6 1.0 N A:PHE44 4.2 18.1 1.0 O A:SER43 4.3 18.8 1.0 CD1 B:PHE44 4.4 15.8 1.0 OG A:SER47 4.4 17.3 1.0 C A:SER43 4.5 18.4 1.0 CG A:PHE44 4.6 16.2 1.0 CE1 B:PHE44 4.6 15.7 1.0 CA B:ASN49 4.8 14.7 1.0 CA B:SER47 4.8 16.4 1.0 N B:ASN49 4.9 14.7 1.0 C A:PHE44 4.9 17.4 1.0 O A:PHE44 5.0 17.8 1.0

K.Zeth, C.Romer, S.I.Patzer, V.Braun. Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli J.Biol.Chem. V. 283 25324 2008.
ISSN: ISSN 0021-9258
PubMed: 18640984
DOI: 10.1074/JBC.M802591200