Atomistry » Magnesium » PDB 3d1r-3dev » 3da3
Atomistry »
  Magnesium »
    PDB 3d1r-3dev »
      3da3 »

Magnesium in PDB 3da3: Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli

Protein crystallography data

The structure of Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli, PDB code: 3da3 was solved by K.Zeth, R.Albrecht, C.Romer, V.Braun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.98 / 2.50
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 119.880, 119.880, 96.220, 90.00, 90.00, 90.00
R / Rfree (%) 23.5 / 29.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli (pdb code 3da3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli, PDB code: 3da3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3da3

Go back to Magnesium Binding Sites List in 3da3
Magnesium binding site 1 out of 2 in the Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg279

b:14.8
occ:1.00
MG B:MG279 3.0 15.9 1.0
ND2 A:ASN49 3.0 14.8 1.0
OG A:SER47 3.0 17.3 1.0
CG B:PRO28 3.6 24.0 1.0
CB A:ASN49 3.6 15.5 1.0
CA B:PHE44 3.7 17.4 1.0
CD B:PRO28 3.7 23.8 1.0
CB A:SER47 3.7 16.6 1.0
CG A:ASN49 3.7 14.7 1.0
CD1 B:PHE44 3.8 15.8 1.0
CB B:PHE44 4.1 16.9 1.0
CB B:SER47 4.1 16.5 1.0
N B:PHE44 4.1 18.3 1.0
O B:SER43 4.3 19.0 1.0
CD1 A:PHE44 4.4 15.4 1.0
OG B:SER47 4.4 16.0 1.0
CG B:PHE44 4.4 17.1 1.0
C B:SER43 4.5 19.0 1.0
O B:HOH288 4.6 15.6 1.0
CE1 A:PHE44 4.7 15.6 1.0
C B:PHE44 4.8 16.9 1.0
CE1 B:PHE44 4.8 15.7 1.0
O B:PHE44 4.8 16.9 1.0
CA A:ASN49 4.9 15.6 1.0
CB B:PRO28 4.9 24.2 1.0
OD1 A:ASN49 4.9 13.4 1.0

Magnesium binding site 2 out of 2 in 3da3

Go back to Magnesium Binding Sites List in 3da3
Magnesium binding site 2 out of 2 in the Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg279

b:15.9
occ:1.00
OG B:SER47 2.7 16.0 1.0
MG A:MG279 3.0 14.8 1.0
ND2 B:ASN49 3.3 13.9 1.0
CB B:SER47 3.3 16.5 1.0
CB B:ASN49 3.5 15.1 1.0
CA A:PHE44 3.8 17.4 1.0
CG A:PRO28 3.8 22.7 1.0
CG B:ASN49 3.9 14.5 1.0
CD A:PRO28 3.9 22.9 1.0
CD1 A:PHE44 4.0 15.4 1.0
CB A:PHE44 4.1 17.3 1.0
CB A:SER47 4.1 16.6 1.0
N A:PHE44 4.2 18.1 1.0
O A:SER43 4.3 18.8 1.0
CD1 B:PHE44 4.4 15.8 1.0
OG A:SER47 4.4 17.3 1.0
C A:SER43 4.5 18.4 1.0
CG A:PHE44 4.6 16.2 1.0
CE1 B:PHE44 4.6 15.7 1.0
CA B:ASN49 4.8 14.7 1.0
CA B:SER47 4.8 16.4 1.0
N B:ASN49 4.9 14.7 1.0
C A:PHE44 4.9 17.4 1.0
O A:PHE44 5.0 17.8 1.0

Reference:

K.Zeth, C.Romer, S.I.Patzer, V.Braun. Crystal Structure of Colicin M, A Novel Phosphatase Specifically Imported By Escherichia Coli J.Biol.Chem. V. 283 25324 2008.
ISSN: ISSN 0021-9258
PubMed: 18640984
DOI: 10.1074/JBC.M802591200
Page generated: Mon Dec 14 08:03:43 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy