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Magnesium in PDB 3dc7: Crystal Structure of the Protein Q88SR8 From Lactobacillus Plantarum. Northeast Structural Genomics Consortium Target LPR109.

Protein crystallography data

The structure of Crystal Structure of the Protein Q88SR8 From Lactobacillus Plantarum. Northeast Structural Genomics Consortium Target LPR109., PDB code: 3dc7 was solved by A.P.Kuzin, M.Abashidze, S.M.Vorobiev, J.Seetharaman, L.Zhao, L.Mao, C.Ciccosanti, R.Xiao, R.Nair, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomicsconsortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.74 / 2.12
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.610, 101.440, 125.550, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 22.4

Other elements in 3dc7:

The structure of Crystal Structure of the Protein Q88SR8 From Lactobacillus Plantarum. Northeast Structural Genomics Consortium Target LPR109. also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Protein Q88SR8 From Lactobacillus Plantarum. Northeast Structural Genomics Consortium Target LPR109. (pdb code 3dc7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Protein Q88SR8 From Lactobacillus Plantarum. Northeast Structural Genomics Consortium Target LPR109., PDB code: 3dc7:

Magnesium binding site 1 out of 1 in 3dc7

Go back to Magnesium Binding Sites List in 3dc7
Magnesium binding site 1 out of 1 in the Crystal Structure of the Protein Q88SR8 From Lactobacillus Plantarum. Northeast Structural Genomics Consortium Target LPR109.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Protein Q88SR8 From Lactobacillus Plantarum. Northeast Structural Genomics Consortium Target LPR109. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg234

b:42.3
occ:1.00
OG B:SER160 2.2 32.0 1.0
OD1 B:ASP161 2.9 32.7 1.0
CB B:SER160 3.1 27.6 1.0
N B:ASP161 3.1 26.6 1.0
C B:SER160 3.2 26.7 1.0
CG B:ASP161 3.5 28.7 1.0
O B:SER160 3.6 26.8 1.0
CA B:SER160 3.7 27.2 1.0
CA B:ASP161 3.7 26.1 1.0
OD2 B:ASP161 4.1 30.0 1.0
CB B:ARG158 4.2 29.8 1.0
CB B:ASP161 4.2 26.7 1.0
CD B:ARG158 4.2 37.1 1.0
N B:SER160 4.4 26.6 1.0
NH1 B:ARG158 4.6 44.6 1.0
CG B:ARG158 4.7 32.3 1.0

Reference:

A.P.Kuzin, M.Abashidze, S.M.Vorobiev, J.Seetharaman, L.Zhao, L.Mao, C.Ciccosanti, R.Xiao, R.Nair, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong. Crystal Structure of the Protein Q88SR8 From Lactobacillus Plantarum. Northeast Structural Genomics Consortium Target LPR109. (Casp Target) To Be Published.
Page generated: Mon Dec 14 08:03:49 2020

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