Magnesium in PDB 3dcb: Crystal Structure of the Drosophila Kinesin Family Member Nod in Complex with Amppnp

The structure of Crystal Structure of the Drosophila Kinesin Family Member Nod in Complex with Amppnp, PDB code: 3dcb was solved by J.C.Cochran, N.K.Mulko, F.J.Kull, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.00 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.864, 74.780, 79.956, 90.00, 90.00, 90.00
R / Rfree (%)	20.9 / 27.5

The binding sites of Magnesium atom in the Crystal Structure of the Drosophila Kinesin Family Member Nod in Complex with Amppnp (pdb code 3dcb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Drosophila Kinesin Family Member Nod in Complex with Amppnp, PDB code: 3dcb:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Drosophila Kinesin Family Member Nod in Complex with Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Drosophila Kinesin Family Member Nod in Complex with Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:20.2 occ:1.00 O3G A:ANP401 2.3 26.5 1.0 OG A:SER94 2.3 20.9 1.0 O2B A:ANP401 2.4 21.0 1.0 O A:HOH426 2.4 31.1 1.0 O A:HOH440 2.4 29.1 1.0 O A:HOH505 2.4 16.3 1.0 CB A:SER94 3.0 16.1 1.0 PG A:ANP401 3.6 29.4 1.0 PB A:ANP401 3.8 25.2 1.0 NH1 A:ARG204 3.8 20.0 1.0 OD1 A:ASP226 3.9 24.9 1.0 O A:HOH445 3.9 13.3 1.0 CA A:SER94 4.0 17.5 1.0 N A:SER94 4.0 16.4 1.0 N3B A:ANP401 4.0 25.9 1.0 OD2 A:ASP226 4.1 25.4 1.0 O2A A:ANP401 4.2 24.4 1.0 O A:HOH539 4.2 34.4 1.0 O1G A:ANP401 4.3 27.4 1.0 CG A:ASP226 4.3 23.2 1.0 NH2 A:ARG204 4.4 20.0 1.0 CZ A:ARG204 4.5 20.0 1.0 O1B A:ANP401 4.5 24.3 1.0 O1A A:ANP401 4.7 28.8 1.0 O2G A:ANP401 4.8 32.6 1.0 PA A:ANP401 4.9 27.4 1.0 O3A A:ANP401 4.9 26.5 1.0

J.C.Cochran, C.V.Sindelar, N.K.Mulko, K.A.Collins, S.E.Kong, R.S.Hawley, F.J.Kull. Atpase Cycle of the Nonmotile Kinesin Nod Allows Microtubule End Tracking and Drives Chromosome Movement. Cell(Cambridge,Mass.) V. 136 110 2009.
ISSN: ISSN 0092-8674
PubMed: 19135893
DOI: 10.1016/J.CELL.2008.11.048