Magnesium in PDB 3ddv: The Crystal Structure of the Transcriptional Regulator (Gntr Family) From Enterococcus Faecalis V583

The structure of The Crystal Structure of the Transcriptional Regulator (Gntr Family) From Enterococcus Faecalis V583, PDB code: 3ddv was solved by R.Zhang, M.Zhou, M.Bargassa, Z.Otwinowski, A.Joachimiak, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	80.06 / 2.65
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	86.153, 86.153, 240.059, 90.00, 90.00, 120.00
R / Rfree (%)	20.6 / 25.1

The binding sites of Magnesium atom in the The Crystal Structure of the Transcriptional Regulator (Gntr Family) From Enterococcus Faecalis V583 (pdb code 3ddv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the The Crystal Structure of the Transcriptional Regulator (Gntr Family) From Enterococcus Faecalis V583, PDB code: 3ddv:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the The Crystal Structure of the Transcriptional Regulator (Gntr Family) From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of the Transcriptional Regulator (Gntr Family) From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg146 b:89.0 occ:1.00 OH A:TYR129 3.4 58.6 1.0 OG A:SER21 3.4 66.0 1.0 CD A:ARG131 3.4 56.1 1.0 O A:HOH156 3.5 55.7 1.0 CB A:SER21 4.1 63.0 1.0 NH1 A:ARG131 4.2 55.6 1.0 CZ A:TYR129 4.2 60.4 1.0 CE2 A:TYR129 4.2 60.0 1.0 CG A:ARG131 4.2 57.3 1.0 NH2 A:ARG116 4.3 65.0 1.0 NE A:ARG131 4.6 56.1 1.0 NE A:ARG116 4.7 62.2 1.0 CZ A:ARG131 4.9 56.2 1.0 CZ A:ARG116 4.9 65.4 1.0

Magnesium binding site 2 out of 3 in the The Crystal Structure of the Transcriptional Regulator (Gntr Family) From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of the Transcriptional Regulator (Gntr Family) From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg146 b:61.6 occ:1.00 OG B:SER21 3.1 50.0 1.0 OH B:TYR129 3.3 49.1 1.0 NH1 B:ARG131 3.6 49.1 1.0 CD B:ARG131 3.6 49.8 1.0 CE2 B:TYR129 3.7 46.5 1.0 CZ B:TYR129 3.9 47.9 1.0 NH1 B:ARG116 4.0 66.1 1.0 CB B:SER21 4.2 49.0 1.0 CZ B:ARG131 4.4 49.4 1.0 NE B:ARG131 4.5 50.3 1.0 CZ B:ARG116 4.7 62.4 1.0 CG B:ARG131 4.7 50.1 1.0 CD2 B:TYR129 4.9 46.2 1.0

Magnesium binding site 3 out of 3 in the The Crystal Structure of the Transcriptional Regulator (Gntr Family) From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Crystal Structure of the Transcriptional Regulator (Gntr Family) From Enterococcus Faecalis V583 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg146 b:78.0 occ:1.00 OH D:TYR129 3.0 49.1 1.0 CE2 D:TYR129 3.7 49.3 1.0 CD D:ARG131 3.7 49.9 1.0 CB D:SER21 3.7 51.8 1.0 OG D:SER21 3.7 53.6 1.0 CZ D:TYR129 3.8 50.1 1.0 NH2 D:ARG131 4.0 47.9 1.0 NH2 D:ARG116 4.3 58.0 1.0 NE D:ARG131 4.6 46.9 1.0 CZ D:ARG116 4.7 56.7 1.0 CZ D:ARG131 4.7 48.1 1.0 NE D:ARG116 4.7 55.9 1.0 CG D:ARG131 4.7 50.9 1.0 CD2 D:TYR129 4.9 47.4 1.0

R.Zhang, M.Zhou, M.Bargassa, Z.Otwinowski, A.Joachimiak. The Crystal Structure of the Transcriptional Regulator (Gntr Family) From Enterococcus Faecalis V583 To Be Published.