Magnesium in PDB 3dlr: Crystal Structure of the Catalytic Core Domain From Pfv Integrase

The structure of Crystal Structure of the Catalytic Core Domain From Pfv Integrase, PDB code: 3dlr was solved by E.Valkov, P.Cherepanov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.18 / 2.20
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	52.140, 52.140, 239.780, 90.00, 90.00, 120.00
R / Rfree (%)	20.9 / 25.9

The binding sites of Magnesium atom in the Crystal Structure of the Catalytic Core Domain From Pfv Integrase (pdb code 3dlr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Catalytic Core Domain From Pfv Integrase, PDB code: 3dlr:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Catalytic Core Domain From Pfv Integrase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Catalytic Core Domain From Pfv Integrase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg49 b:38.2 occ:1.00 O A:HOH43 1.9 33.0 1.0 O A:HOH39 2.1 43.8 1.0 OD1 A:ASP185 2.1 33.5 1.0 O A:HOH36 2.1 30.5 1.0 OD1 A:ASP128 2.3 33.3 1.0 O A:HOH44 2.5 34.6 1.0 CG A:ASP185 3.2 34.5 1.0 CG A:ASP128 3.3 32.6 1.0 OD2 A:ASP128 3.6 36.9 1.0 OD2 A:ASP185 3.7 35.0 1.0 O A:HOH35 4.2 29.9 1.0 O A:TYR129 4.2 30.0 1.0 O A:HOH45 4.3 33.8 1.0 N A:TYR129 4.4 29.9 1.0 CB A:ASP185 4.5 32.6 1.0 O A:HOH46 4.7 32.7 1.0 CB A:ASP128 4.7 30.3 1.0 CA A:ASP128 5.0 30.1 1.0

E.Valkov, S.S.Gupta, S.Hare, A.Helander, P.Roversi, M.Mcclure, P.Cherepanov. Functional and Structural Characterization of the Integrase From the Prototype Foamy Virus. Nucleic Acids Res. V. 37 243 2009.
ISSN: ISSN 0305-1048
PubMed: 19036793
DOI: 10.1093/NAR/GKN938