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Magnesium in PDB 3dnp: Crystal Structure of Stress Response Protein Yhax From Bacillus Subtilis

Protein crystallography data

The structure of Crystal Structure of Stress Response Protein Yhax From Bacillus Subtilis, PDB code: 3dnp was solved by C.Chang, C.Tesar, R.Jedrzejczak, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.85
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 63.939, 63.939, 161.485, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 20.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Stress Response Protein Yhax From Bacillus Subtilis (pdb code 3dnp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Stress Response Protein Yhax From Bacillus Subtilis, PDB code: 3dnp:

Magnesium binding site 1 out of 1 in 3dnp

Go back to Magnesium Binding Sites List in 3dnp
Magnesium binding site 1 out of 1 in the Crystal Structure of Stress Response Protein Yhax From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Stress Response Protein Yhax From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:29.9
occ:0.50
O A:HOH467 2.0 29.3 1.0
O A:HOH468 2.1 34.2 1.0
O A:HOH469 2.1 34.1 1.0
OE2 A:GLU81 4.1 28.3 1.0
O A:HOH352 4.1 45.4 1.0
O A:HOH330 4.2 25.7 1.0
OE1 A:GLU81 4.2 26.4 1.0
O A:ASP76 4.4 24.8 1.0
O A:HOH378 4.4 25.1 1.0
CD A:GLU81 4.6 27.3 1.0
CD A:PRO78 4.8 26.0 1.0
NZ A:LYS109 4.9 24.4 0.5

Reference:

C.Chang, C.Tesar, R.Jedrzejczak, A.Joachimiak. Crystal Structure of Stress Response Protein Yhax From Bacillus Subtilis To Be Published.
Page generated: Wed Aug 14 12:34:47 2024

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