Magnesium in PDB 3dty: Crystal Structure of An Oxidoreductase From Pseudomonas Syringae

The structure of Crystal Structure of An Oxidoreductase From Pseudomonas Syringae, PDB code: 3dty was solved by S.Eswaramoorthy, A.Mahmood, S.K.Burley, S.Swaminathan, New Yorksgx Research Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.04
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	94.281, 80.930, 110.544, 90.00, 93.63, 90.00
R / Rfree (%)	19.3 / 21.8

The binding sites of Magnesium atom in the Crystal Structure of An Oxidoreductase From Pseudomonas Syringae (pdb code 3dty). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of An Oxidoreductase From Pseudomonas Syringae, PDB code: 3dty:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure of An Oxidoreductase From Pseudomonas Syringae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Oxidoreductase From Pseudomonas Syringae within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg398 b:19.2 occ:1.00 O B:HOH398 2.0 10.3 1.0 O A:HOH400 2.0 15.7 1.0 O B:HOH401 2.1 20.5 1.0 O B:HOH399 2.1 9.1 1.0 O B:HOH400 2.1 19.8 1.0 O A:HOH401 2.3 17.2 1.0 O A:ARG230 4.0 10.1 1.0 OE2 B:GLU249 4.2 14.0 1.0 O A:HOH584 4.2 24.8 1.0 O B:HOH407 4.2 5.9 1.0 O B:HOH532 4.2 30.0 1.0 O A:HOH472 4.3 12.8 1.0 O B:HOH515 4.6 27.7 1.0 CG A:GLN231 4.6 11.8 1.0 O A:HOH425 5.0 13.8 1.0 NE2 A:GLN231 5.0 13.7 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure of An Oxidoreductase From Pseudomonas Syringae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Oxidoreductase From Pseudomonas Syringae within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg399 b:30.0 occ:1.00 O A:HOH404 1.9 15.4 1.0 O A:HOH403 1.9 23.6 1.0 OE2 A:GLU122 2.1 22.8 1.0 O A:HOH402 2.1 23.2 1.0 OD1 A:ASN126 2.2 21.1 1.0 O A:HOH405 2.3 22.6 1.0 CG A:ASN126 3.1 20.3 1.0 CD A:GLU122 3.2 21.9 1.0 ND2 A:ASN126 3.3 23.4 1.0 CG A:GLU122 3.6 17.9 1.0 O A:GLU122 4.0 12.3 1.0 OE1 A:GLU122 4.3 23.8 1.0 CB A:ASN126 4.5 16.9 1.0 C A:GLU122 4.8 12.7 1.0 OE1 A:GLU129 4.9 29.3 1.0 CB A:GLU122 4.9 15.5 1.0 CA A:ASN126 5.0 14.4 1.0 OE2 A:GLU129 5.0 30.4 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure of An Oxidoreductase From Pseudomonas Syringae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of An Oxidoreductase From Pseudomonas Syringae within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg398 b:17.8 occ:1.00 O E:HOH400 1.9 14.9 1.0 O D:HOH398 1.9 11.3 1.0 O E:HOH402 2.1 18.3 1.0 O D:HOH399 2.1 9.6 1.0 O D:HOH400 2.2 16.7 1.0 O E:HOH401 2.3 18.8 1.0 O E:ARG230 3.9 7.2 1.0 O E:HOH522 4.2 17.0 1.0 O D:HOH483 4.2 20.2 1.0 OE2 D:GLU249 4.2 18.5 1.0 O D:HOH406 4.3 5.9 1.0 CG E:GLN231 4.6 10.4 1.0 O E:HOH466 4.6 11.9 1.0 O E:HOH600 4.9 30.6 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure of An Oxidoreductase From Pseudomonas Syringae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of An Oxidoreductase From Pseudomonas Syringae within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg399 b:30.8 occ:1.00 O E:HOH405 1.9 23.3 1.0 O E:HOH404 2.0 21.9 1.0 OD1 E:ASN126 2.0 18.2 1.0 O E:HOH406 2.0 21.8 1.0 OE2 E:GLU122 2.2 25.3 1.0 O E:HOH403 2.2 25.3 1.0 CG E:ASN126 3.0 17.7 1.0 ND2 E:ASN126 3.3 19.0 1.0 CD E:GLU122 3.3 22.9 1.0 CG E:GLU122 3.9 18.9 1.0 O E:GLU122 4.0 13.1 1.0 CB E:ASN126 4.3 14.5 1.0 OE1 E:GLU122 4.4 24.4 1.0 OE1 E:GLU129 4.6 29.0 1.0 CA E:ASN126 4.7 13.6 1.0 C E:GLU122 4.8 12.4 1.0 N E:ASN126 4.9 14.0 1.0

S.Eswaramoorthy, A.Mahmood, S.K.Burley, S.Swaminathan. Crystal Structure of An Oxidoreductase From Pseudomonas Syringae To Be Published.