Magnesium in PDB 3dv6: Crystal Structure of SAG506-01, Tetragonal, Crystal 2

The structure of Crystal Structure of SAG506-01, Tetragonal, Crystal 2, PDB code: 3dv6 was solved by C.L.Brooks, R.J.Blackler, S.Gerstenbruch, P.Kosma, S.Muller-Loennies, H.Brade, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.95 / 1.95
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.420, 71.420, 85.080, 90.00, 90.00, 90.00
R / Rfree (%)	22.9 / 30.3

The binding sites of Magnesium atom in the Crystal Structure of SAG506-01, Tetragonal, Crystal 2 (pdb code 3dv6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of SAG506-01, Tetragonal, Crystal 2, PDB code: 3dv6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of SAG506-01, Tetragonal, Crystal 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of SAG506-01, Tetragonal, Crystal 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg109 b:39.6 occ:1.00 O A:HOH121 2.1 27.5 1.0 OE2 A:GLU81 3.6 21.1 1.0 OE1 A:GLU81 3.8 26.0 1.0 OE1 A:GLN79 3.9 41.3 1.0 CD A:GLU81 4.1 24.4 1.0 CD A:GLN79 4.9 36.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of SAG506-01, Tetragonal, Crystal 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of SAG506-01, Tetragonal, Crystal 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg110 b:47.1 occ:1.00 O A:HOH175 2.4 26.3 1.0 O A:HOH161 2.5 30.2 1.0 O A:HOH151 2.7 25.1 1.0 O A:HOH178 3.7 29.1 1.0 O A:HOH153 4.1 18.3 1.0 OG A:SER56 4.4 38.2 1.0 OE1 A:GLU55 4.8 32.5 1.0

C.L.Brooks, R.J.Blackler, S.Gerstenbruch, P.Kosma, S.Muller-Loennies, H.Brade, S.V.Evans. Pseudo-Symmetry and Twinning in Crystals of Homologous Antibody Fv Fragments. Acta Crystallogr.,Sect.D V. 64 1250 2008.
ISSN: ISSN 0907-4449
PubMed: 19018101
DOI: 10.1107/S0907444908033453