Magnesium in PDB 3e18: Crystal Structure of Nad-Binding Protein From Listeria Innocua

The structure of Crystal Structure of Nad-Binding Protein From Listeria Innocua, PDB code: 3e18 was solved by Y.Patskovsky, U.A.Ramagopal, R.Toro, M.Rutter, S.Hu, C.Groshong, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	91.083, 91.555, 96.453, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 23.7

The structure of Crystal Structure of Nad-Binding Protein From Listeria Innocua also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the Crystal Structure of Nad-Binding Protein From Listeria Innocua (pdb code 3e18). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Nad-Binding Protein From Listeria Innocua, PDB code: 3e18:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Nad-Binding Protein From Listeria Innocua


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Nad-Binding Protein From Listeria Innocua within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg358 b:55.3 occ:1.00 O A:HOH535 2.1 55.9 1.0 O A:HOH538 2.1 46.8 1.0 O A:HOH411 2.2 44.8 1.0 O A:HOH534 2.2 47.5 1.0 O A:HOH537 2.4 40.8 1.0 O A:HOH462 2.5 49.2 1.0 OD1 A:ASP188 3.9 49.0 1.0 O A:HOH536 4.0 52.2 1.0 O A:LEU184 4.1 27.7 1.0 O A:HOH509 4.2 48.9 1.0 O A:VAL187 4.3 34.3 1.0 CA A:ASP188 4.5 38.1 1.0 O A:PHE185 4.6 31.8 1.0 CG A:ASP188 4.6 51.0 1.0 CB A:ASP188 4.6 43.6 1.0 OE2 A:GLU325 4.7 31.0 1.0 O A:HOH444 4.8 32.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Nad-Binding Protein From Listeria Innocua


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Nad-Binding Protein From Listeria Innocua within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg358 b:53.5 occ:1.00 O B:HOH577 2.1 43.3 1.0 O B:HOH655 2.2 42.5 1.0 O B:HOH509 2.2 46.6 1.0 O B:HOH512 2.4 56.2 1.0 O B:HOH510 2.5 43.2 1.0 O B:HOH508 2.6 59.6 1.0 OD1 B:ASP188 4.0 47.0 1.0 O B:HOH604 4.3 35.1 1.0 O B:LEU184 4.4 27.7 1.0 CG B:ASP188 4.4 48.7 1.0 OE2 B:GLU325 4.5 36.4 1.0 O B:HOH511 4.5 49.6 1.0 CB B:ASP188 4.6 43.5 1.0 O B:PHE185 4.6 31.1 1.0 CA B:ASP188 4.7 40.4 1.0 O B:HOH625 4.9 46.2 1.0 O B:VAL187 4.9 34.1 1.0

Y.Patskovsky, U.A.Ramagopal, R.Toro, M.Rutter, S.Hu, C.Groshong, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of Nad-Binding Protein From Listeria Innocua To Be Published.